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  5. Zm00001e034164_P001

Zm00001e034164_P001


Description : ubiquitin-fold protein (RUB)


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e034164_P001
Cluster HCCA: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.04 Archaeplastida
AT1G31340 RUB1, ATRUB1, NEDD8 related to ubiquitin 1 0.02 Archaeplastida
AT2G35635 UBQ7, RUB2 ubiquitin 7 0.06 Archaeplastida
AT5G37640 UBQ9 ubiquitin 9 0.03 Archaeplastida
Cpa|evm.model.tig00021318.73 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01023471001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
Gb_02030 No alias ubiquitin-fold protein (UBQ) 0.03 Archaeplastida
Gb_28672 No alias ubiquitin-fold protein (RUB) 0.04 Archaeplastida
Gb_35273 No alias ubiquitin-fold protein (UBQ) 0.03 Archaeplastida
LOC_Os02g06640.1 No alias ubiquitin-fold protein (UBQ) 0.03 Archaeplastida
MA_14427g0010 No alias ubiquitin-fold protein (UBQ) 0.04 Archaeplastida
Mp4g02740.1 No alias ubiquitin-fold protein (UBQ) 0.03 Archaeplastida
Mp4g02760.1 No alias Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare... 0.03 Archaeplastida
Mp7g14690.1 No alias component RPS27a of SSU proteome 0.03 Archaeplastida
Pp3c19_8830V3.1 No alias polyubiquitin 10 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 3 74
No external refs found!