Zm00001e034445_P001

Description : Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana (sp|q9fi80|pp425_arath : 429.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0014907 (SeedPlants) Phylogenetic Tree(s): OG_06_0014907_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e034445_P001
Cluster	HCCA: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00262470	No alias	Pentatricopeptide repeat-containing protein At2g02980,...	0.04	Archaeplastida
AMTR_s00014p00090010	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
AMTR_s00029p00235510	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
AMTR_s00031p00067070	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.04	Archaeplastida
AMTR_s00038p00071780	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g26540...	0.02	Archaeplastida
AMTR_s00044p00169670	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g17210...	0.03	Archaeplastida
AMTR_s00049p00210350	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00057p00087430	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
AMTR_s00061p00127300	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
AMTR_s00065p00031420	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g33680...	0.03	Archaeplastida
AMTR_s00068p00072270	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
AMTR_s00077p00031710	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
AMTR_s00111p00107400	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g21065...	0.03	Archaeplastida
AMTR_s00122p00115170	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
AMTR_s00170p00032020	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
AT1G11290	CRR22	Pentatricopeptide repeat (PPR) superfamily protein	0.1	Archaeplastida
AT1G15510	VAC1, ECB2, ATECB2	Tetratricopeptide repeat (TPR)-like superfamily protein	0.14	Archaeplastida
AT1G20230	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT2G02750	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT2G02980	OTP85	Pentatricopeptide repeat (PPR) superfamily protein	0.05	Archaeplastida
AT2G22410	SLO1	SLOW GROWTH 1	0.03	Archaeplastida
AT2G33760	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT3G22150	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Archaeplastida
AT3G29230	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.08	Archaeplastida
AT3G57430	OTP84	Tetratricopeptide repeat (TPR)-like superfamily protein	0.1	Archaeplastida
AT3G63370	OTP86	Tetratricopeptide repeat (TPR)-like superfamily protein	0.09	Archaeplastida
AT4G13650	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT4G18750	DOT4	Pentatricopeptide repeat (PPR) superfamily protein	0.06	Archaeplastida
AT4G39952	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT5G03800	emb1899, EMB175, EMB166	Pentatricopeptide repeat (PPR) superfamily protein	0.1	Archaeplastida
AT5G40410	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT5G55740	CRR21	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
GSVIVT01000178001	No alias	RNA processing.organelle machineries.RNA...	0.08	Archaeplastida
GSVIVT01000244001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
GSVIVT01003957001	No alias	Pentatricopeptide repeat-containing protein At5g65570...	0.06	Archaeplastida
GSVIVT01008173001	No alias	Pentatricopeptide repeat-containing protein At1g18485...	0.05	Archaeplastida
GSVIVT01008965001	No alias	Pentatricopeptide repeat-containing protein At4g18520,...	0.06	Archaeplastida
GSVIVT01009227001	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
GSVIVT01009407001	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
GSVIVT01009789001	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.03	Archaeplastida
GSVIVT01011479001	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.07	Archaeplastida
GSVIVT01015466001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.08	Archaeplastida
GSVIVT01017209001	No alias	RNA processing.organelle machineries.RNA...	0.1	Archaeplastida
GSVIVT01017365001	No alias	Putative pentatricopeptide repeat-containing protein...	0.08	Archaeplastida
GSVIVT01020091001	No alias	RNA processing.organelle machineries.RNA...	0.09	Archaeplastida
GSVIVT01021246001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
GSVIVT01021268001	No alias	Pentatricopeptide repeat-containing protein At4g18840...	0.09	Archaeplastida
GSVIVT01021756001	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.08	Archaeplastida
GSVIVT01022230001	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.04	Archaeplastida
GSVIVT01022894001	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.05	Archaeplastida
GSVIVT01023971001	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.06	Archaeplastida
GSVIVT01025569001	No alias	Pentatricopeptide repeat-containing protein At5g66500,...	0.03	Archaeplastida
GSVIVT01026181001	No alias	Pentatricopeptide repeat-containing protein At5g08305...	0.05	Archaeplastida
GSVIVT01027077001	No alias	RNA processing.organelle machineries.RNA...	0.09	Archaeplastida
GSVIVT01027196001	No alias	Pentatricopeptide repeat-containing protein At5g08510...	0.04	Archaeplastida
GSVIVT01029382001	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
GSVIVT01030248001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
GSVIVT01033389001	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
GSVIVT01033735001	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.05	Archaeplastida
GSVIVT01036142001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.05	Archaeplastida
GSVIVT01036511001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
Gb_00195	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_00776	No alias	Pentatricopeptide repeat-containing protein At5g50390,...	0.05	Archaeplastida
Gb_00852	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_01327	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_02808	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.02	Archaeplastida
Gb_03578	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Gb_05554	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_07638	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.04	Archaeplastida
Gb_08569	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_11220	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_11688	No alias	OTP70 plastidial RNA splicing factor	0.02	Archaeplastida
Gb_11926	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_12556	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.04	Archaeplastida
Gb_14172	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_14324	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_14867	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_16448	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
Gb_17076	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_17092	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_17294	No alias	RNA editing factor (MEF3)	0.03	Archaeplastida
Gb_17620	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_18979	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_20153	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_21270	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
Gb_21949	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Gb_23678	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
Gb_24674	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.02	Archaeplastida
Gb_25130	No alias	Pentatricopeptide repeat-containing protein At3g49170,...	0.04	Archaeplastida
Gb_26155	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.02	Archaeplastida
Gb_26260	No alias	RNA editing factor (MEF7)	0.02	Archaeplastida
Gb_28390	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Gb_28393	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_30523	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.04	Archaeplastida
Gb_31374	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
Gb_32439	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.02	Archaeplastida
Gb_33210	No alias	RNA editing factor (OTP82)	0.06	Archaeplastida
Gb_37517	No alias	RNA editing factor (OTP82)	0.04	Archaeplastida
Gb_39402	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_40680	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_41341	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
LOC_Os01g10800.1	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.05	Archaeplastida
LOC_Os01g62910.1	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.07	Archaeplastida
LOC_Os02g50280.1	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
LOC_Os03g04390.1	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.04	Archaeplastida
LOC_Os03g44210.2	No alias	RNA editing factor (SEL1/PDM1)	0.05	Archaeplastida
LOC_Os03g58100.1	No alias	RNA editing factor (OTP85)	0.03	Archaeplastida
LOC_Os03g59264.1	No alias	lectin chaperone (CRT)	0.07	Archaeplastida
LOC_Os04g39410.1	No alias	RNA editing factor (OTP86)	0.09	Archaeplastida
LOC_Os04g51350.1	No alias	RNA editing factor (AEF1)	0.05	Archaeplastida
LOC_Os05g12130.1	No alias	RNA editing factor (ECD1)	0.08	Archaeplastida
LOC_Os05g49920.1	No alias	RNA editing factor (ECB2/VAC1)	0.06	Archaeplastida
LOC_Os05g50950.1	No alias	Pentatricopeptide repeat-containing protein At4g01030,...	0.07	Archaeplastida
LOC_Os07g02280.1	No alias	RNA editing factor (OTP80)	0.06	Archaeplastida
LOC_Os07g07620.1	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.04	Archaeplastida
LOC_Os07g09370.1	No alias	RNA editing factor (CRR28)	0.04	Archaeplastida
LOC_Os07g39090.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
LOC_Os10g34720.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
LOC_Os11g29230.1	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.02	Archaeplastida
LOC_Os12g01850.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_10164206g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.02	Archaeplastida
MA_10430171g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_135075g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_138676g0010	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida
MA_17949g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_18165g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_31170g0010	No alias	RNA editing factor (MEF19)	0.02	Archaeplastida
MA_381817g0020	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
MA_4438g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_525914g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_615077g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.02	Archaeplastida
MA_71104g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.05	Archaeplastida
MA_77675g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_81105g0010	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
MA_81514g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_8319g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.03	Archaeplastida
MA_89214g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_94165g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
MA_953793g0020	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_95507g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Pp3c4_16600V3.1	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Archaeplastida
Smo100125	No alias	Pentatricopeptide repeat-containing protein At5g39350...	0.02	Archaeplastida
Smo106861	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Smo107304	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
Smo134463	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Smo411	No alias	Pentatricopeptide repeat-containing protein At4g19220,...	0.02	Archaeplastida
Smo52548	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.02	Archaeplastida
Smo79648	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Smo82024	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
Smo90123	No alias	Pentatricopeptide repeat-containing protein At3g22690...	0.02	Archaeplastida
Smo98955	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Solyc01g007850.2.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
Solyc01g081020.1.1	No alias	RNA editing factor (OTP80)	0.03	Archaeplastida
Solyc01g097670.4.1	No alias	RNA editing factor (ECD1)	0.1	Archaeplastida
Solyc01g098150.3.1	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.11	Archaeplastida
Solyc02g081900.4.1	No alias	RNA editing factor (OTP84)	0.02	Archaeplastida
Solyc02g088470.1.1	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.03	Archaeplastida
Solyc03g111210.4.1	No alias	RNA editing factor (OTP80)	0.08	Archaeplastida
Solyc03g119950.1.1	No alias	RNA editing factor (ECB2/VAC1)	0.09	Archaeplastida
Solyc04g076800.3.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Solyc05g006800.2.1	No alias	Pentatricopeptide repeat-containing protein At1g59720,...	0.11	Archaeplastida
Solyc05g013200.1.1	No alias	RNA editing factor (OTP85)	0.05	Archaeplastida
Solyc07g062820.1.1	No alias	RNA editing factor (SEL1/PDM1)	0.04	Archaeplastida
Solyc07g065730.1.1	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.07	Archaeplastida
Solyc08g013850.1.1	No alias	RNA editing factor (CRR21)	0.05	Archaeplastida
Solyc09g082450.1.1	No alias	RNA editing factor (YS1)	0.08	Archaeplastida
Solyc11g008940.1.1	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.1	Archaeplastida
Solyc11g011860.1.1	No alias	Pentatricopeptide repeat-containing protein At3g14330...	0.03	Archaeplastida
Solyc11g065250.1.1	No alias	Pentatricopeptide repeat-containing protein At5g39680...	0.05	Archaeplastida
Solyc11g066920.1.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.08	Archaeplastida
Solyc12g006575.1.1	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Zm00001e012607_P002	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Zm00001e013211_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.03	Archaeplastida
Zm00001e013713_P001	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.04	Archaeplastida
Zm00001e020567_P001	No alias	RNA editing factor (MEF7)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Neighborhood
MF	GO:0060590	ATPase regulator activity	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	473	598
IPR002885	Pentatricopeptide_repeat	273	293
IPR002885	Pentatricopeptide_repeat	303	347
IPR002885	Pentatricopeptide_repeat	197	243
IPR002885	Pentatricopeptide_repeat	367	398

External Links

No external refs found!

Zm00001e034445_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation