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  5. Zm00001e034916_P002

Zm00001e034916_P002


Description : component TAF15 of TFIId basal transcription regulation complex


Gene families : OG0006677 (Archaeplastida) Phylogenetic Tree(s): OG0006677_tree ,
OG_05_0007121 (LandPlants) Phylogenetic Tree(s): OG_05_0007121_tree ,
OG_06_0007805 (SeedPlants) Phylogenetic Tree(s): OG_06_0007805_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e034916_P002
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
Cre07.g328400 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
LOC_Os07g19560.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.07 Archaeplastida
LOC_Os09g12800.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.02 Archaeplastida
Mp8g16600.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.04 Archaeplastida
Solyc11g040050.3.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 215 241
IPR001876 Znf_RanBP2 143 172
IPR000504 RRM_dom 14 91
No external refs found!