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  5. Zm00001e035415_P001

Zm00001e035415_P001


Description : U-box domain-containing protein 4 OS=Arabidopsis thaliana (sp|o22193|pub4_arath : 175.0)


Gene families : OG0003211 (Archaeplastida) Phylogenetic Tree(s): OG0003211_tree ,
OG_05_0002427 (LandPlants) Phylogenetic Tree(s): OG_05_0002427_tree ,
OG_06_0001492 (SeedPlants) Phylogenetic Tree(s): OG_06_0001492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035415_P001
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00145690 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT4G16490 No alias ARM repeat superfamily protein 0.04 Archaeplastida
GSVIVT01009347001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc04g014810.3.1 No alias U-box domain-containing protein 4 OS=Arabidopsis... 0.09 Archaeplastida
Solyc04g077850.3.1 No alias U-box domain-containing protein 4 OS=Arabidopsis... 0.05 Archaeplastida
Solyc11g012440.1.1 No alias U-box domain-containing protein 4 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR000225 Armadillo 184 217
IPR000225 Armadillo 94 133
IPR000225 Armadillo 136 175
No external refs found!