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  5. Zm00001e035455_P001

Zm00001e035455_P001


Description : component MSH2 of MSH2-x mismatch repair heterodimers


Gene families : OG0004906 (Archaeplastida) Phylogenetic Tree(s): OG0004906_tree ,
OG_05_0005790 (LandPlants) Phylogenetic Tree(s): OG_05_0005790_tree ,
OG_06_0010054 (SeedPlants) Phylogenetic Tree(s): OG_06_0010054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035455_P001
Cluster HCCA: Cluster_344

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00236950 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.mismatch... 0.02 Archaeplastida
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 0.03 Archaeplastida
Cpa|evm.model.tig00001224.8 No alias DNA damage response.DNA repair mechanisms.mismatch... 0.04 Archaeplastida
Cre01.g003463 No alias DNA mismatch repair protein MSH2 OS=Zea mays 0.04 Archaeplastida
GSVIVT01008235001 No alias DNA damage response.DNA repair mechanisms.mismatch... 0.02 Archaeplastida
Gb_33909 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.03 Archaeplastida
LOC_Os05g19270.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.02 Archaeplastida
MA_59360g0010 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.05 Archaeplastida
Mp4g08420.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.08 Archaeplastida
Pp3c22_850V3.1 No alias MUTS homolog 2 0.03 Archaeplastida
Smo407609 No alias DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc06g069230.3.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004814 arginine-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006420 arginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043138 3'-5' DNA helicase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR007860 DNA_mmatch_repair_MutS_con_dom 145 285
IPR007695 DNA_mismatch_repair_MutS-lik_N 25 130
IPR007861 DNA_mismatch_repair_MutS_clamp 471 564
IPR000432 DNA_mismatch_repair_MutS_C 663 861
IPR007696 DNA_mismatch_repair_MutS_core 302 607
No external refs found!