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  5. Zm00001e035514_P002

Zm00001e035514_P002


Description : Cell division control protein 48 homolog C OS=Arabidopsis thaliana (sp|q9ss94|cd48c_arath : 644.0)


Gene families : OG0000169 (Archaeplastida) Phylogenetic Tree(s): OG0000169_tree ,
OG_05_0006701 (LandPlants) Phylogenetic Tree(s): OG_05_0006701_tree ,
OG_06_0006831 (SeedPlants) Phylogenetic Tree(s): OG_06_0006831_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035514_P002
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00071550 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog C... 0.03 Archaeplastida
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.03 Archaeplastida
AT3G56690 CIP111 Cam interacting protein 111 0.04 Archaeplastida
AT5G08470 PEX1 peroxisome 1 0.04 Archaeplastida
Cpa|evm.model.tig00021463.10 No alias Cell division control protein 48 homolog D... 0.02 Archaeplastida
Cre09.g398550 No alias Cell division control protein 48 homolog C... 0.02 Archaeplastida
GSVIVT01007689001 No alias Cell division cycle protein 48 homolog OS=Glycine max 0.05 Archaeplastida
GSVIVT01010343001 No alias Cell division control protein 48 homolog C... 0.03 Archaeplastida
GSVIVT01025783001 No alias Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os06g01980.1 No alias Cell division control protein 48 homolog C... 0.07 Archaeplastida
Pp3c18_11480V3.1 No alias cell division cycle 48C 0.04 Archaeplastida
Pp3c4_26860V3.1 No alias ATPase, AAA-type, CDC48 protein 0.02 Archaeplastida
Pp3c6_25280V3.1 No alias Cam interacting protein 111 0.03 Archaeplastida
Solyc01g068330.4.1 No alias Cell division control protein 48 homolog C... 0.04 Archaeplastida
Solyc05g012190.3.1 No alias Cell division control protein 48 homolog B... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004526 ribonuclease P activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004813 alanine-tRNA ligase activity IEP Neighborhood
MF GO:0004827 proline-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006419 alanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006433 prolyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 514 642
IPR003959 ATPase_AAA_core 215 359
No external refs found!