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  5. Zm00001e035587_P001

Zm00001e035587_P001


Description : Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana (sp|q9fmg4|sc35_arath : 164.0)


Gene families : OG0001859 (Archaeplastida) Phylogenetic Tree(s): OG0001859_tree ,
OG_05_0001512 (LandPlants) Phylogenetic Tree(s): OG_05_0001512_tree ,
OG_06_0001418 (SeedPlants) Phylogenetic Tree(s): OG_06_0001418_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035587_P001
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00145180 evm_27.TU.AmTr_v1... Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT5G64200 SC35, ATSC35, At-SC35 ortholog of human splicing factor SC35 0.03 Archaeplastida
LOC_Os08g37960.1 No alias Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.06 Archaeplastida
MA_10426661g0020 No alias Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.05 Archaeplastida
Mp3g22400.1 No alias Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g105140.3.1 No alias Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.09 Archaeplastida
Solyc04g074040.3.1 No alias Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 19 88
No external refs found!