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  5. Zm00001e035695_P004

Zm00001e035695_P004


Description : chromatin remodeling factor (Rad5)


Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree ,
OG_05_0007064 (LandPlants) Phylogenetic Tree(s): OG_05_0007064_tree ,
OG_06_0007526 (SeedPlants) Phylogenetic Tree(s): OG_06_0007526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035695_P004
Cluster HCCA: Cluster_358

Target Alias Description ECC score Gene Family Method Actions
AT3G20010 No alias SNF2 domain-containing protein / helicase... 0.05 Archaeplastida
AT5G22750 RAD5 DNA/RNA helicase protein 0.03 Archaeplastida
LOC_Os02g32570.1 No alias chromatin remodeling factor (Rad5) 0.06 Archaeplastida
LOC_Os07g44800.1 No alias chromatin remodeling factor (Rad5) 0.05 Archaeplastida
LOC_Os08g08220.1 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.02 Archaeplastida
MA_10434222g0010 No alias chromatin remodeling factor (Rad5) 0.03 Archaeplastida
MA_218767g0010 No alias DNA repair protein RAD5A OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_32772g0010 No alias DNA repair protein RAD5A OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc02g050280.4.1 No alias chromatin remodeling factor (Ris1) 0.02 Archaeplastida
Solyc03g005460.4.1 No alias chromatin remodeling factor (Rad5) 0.04 Archaeplastida
Solyc11g066790.2.1 No alias chromatin remodeling factor (Rad5) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0030896 checkpoint clamp complex IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 200 534
IPR001650 Helicase_C 661 740
IPR014905 HIRAN 24 116
No external refs found!