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  5. Zm00001e035782_P001

Zm00001e035782_P001


Description : Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana (sp|q9lpc4|ppr1_arath : 336.0)


Gene families : OG0003420 (Archaeplastida) Phylogenetic Tree(s): OG0003420_tree ,
OG_05_0002877 (LandPlants) Phylogenetic Tree(s): OG_05_0002877_tree ,
OG_06_0009470 (SeedPlants) Phylogenetic Tree(s): OG_06_0009470_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035782_P001
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
AT1G01970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Gb_22012 No alias Pentatricopeptide repeat-containing protein At1g01970... 0.03 Archaeplastida
LOC_Os02g39820.1 No alias Pentatricopeptide repeat-containing protein At1g19525... 0.02 Archaeplastida
MA_436401g0010 No alias Pentatricopeptide repeat-containing protein At1g19525... 0.03 Archaeplastida
Mp4g06140.1 No alias Pentatricopeptide repeat-containing protein At1g01970... 0.03 Archaeplastida
Solyc01g091450.3.1 No alias Pentatricopeptide repeat-containing protein At1g01970... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 154 188
IPR002885 Pentatricopeptide_repeat 231 257
IPR002885 Pentatricopeptide_repeat 305 330
IPR002885 Pentatricopeptide_repeat 195 224
IPR002885 Pentatricopeptide_repeat 266 289
No external refs found!