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  5. Zm00001e035876_P001

Zm00001e035876_P001


Description : C3H zinc finger transcription factor


Gene families : OG0000743 (Archaeplastida) Phylogenetic Tree(s): OG0000743_tree ,
OG_05_0000692 (LandPlants) Phylogenetic Tree(s): OG_05_0000692_tree ,
OG_06_0001988 (SeedPlants) Phylogenetic Tree(s): OG_06_0001988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035876_P001
Cluster HCCA: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.03 Archaeplastida
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.04 Archaeplastida
GSVIVT01001467001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.07 Archaeplastida
GSVIVT01037782001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 Archaeplastida
Gb_29751 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Gb_37367 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Gb_39136 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
LOC_Os03g21140.1 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
LOC_Os07g48410.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
MA_33942g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_479847g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Solyc01g008600.4.1 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
Solyc11g065320.2.1 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
Zm00001e001546_P001 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
Zm00001e020869_P004 No alias C3H zinc finger transcription factor 0.06 Archaeplastida
Zm00001e038256_P001 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
Zm00001e039250_P004 No alias C3H zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 236 256
IPR000504 RRM_dom 376 421
No external refs found!