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  5. Zm00001e035905_P001

Zm00001e035905_P001


Description : Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana (sp|q9sad9|ppr40_arath : 429.0)


Gene families : OG0001265 (Archaeplastida) Phylogenetic Tree(s): OG0001265_tree ,
OG_05_0000728 (LandPlants) Phylogenetic Tree(s): OG_05_0000728_tree ,
OG_06_0007555 (SeedPlants) Phylogenetic Tree(s): OG_06_0007555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035905_P001
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.05 Archaeplastida
AMTR_s00144p00054940 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g40240,... 0.04 Archaeplastida
AMTR_s00153p00079500 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56030,... 0.06 Archaeplastida
AT2G40240 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.04 Archaeplastida
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 Archaeplastida
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 261 292
IPR002885 Pentatricopeptide_repeat 366 398
IPR002885 Pentatricopeptide_repeat 604 648
IPR002885 Pentatricopeptide_repeat 164 192
IPR002885 Pentatricopeptide_repeat 404 454
IPR002885 Pentatricopeptide_repeat 545 591
IPR002885 Pentatricopeptide_repeat 299 348
IPR002885 Pentatricopeptide_repeat 476 522
No external refs found!