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  5. Zm00001e036288_P001

Zm00001e036288_P001


Description : RSZ21/22 RNA splicing factor


Gene families : OG0002592 (Archaeplastida) Phylogenetic Tree(s): OG0002592_tree ,
OG_05_0002271 (LandPlants) Phylogenetic Tree(s): OG_05_0002271_tree ,
OG_06_0002305 (SeedPlants) Phylogenetic Tree(s): OG_06_0002305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e036288_P001
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AT1G23860 RSZ21, At-RSZ21,... RS-containing zinc finger protein 21 0.03 Archaeplastida
AT2G24590 At-RSZ22a, RSZ22a RNA recognition motif and CCHC-type zinc finger domains... 0.04 Archaeplastida
AT4G31580 RSZ22, At-RSZ22,... serine/arginine-rich 22 0.03 Archaeplastida
Cre09.g408200 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
GSVIVT01033172001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
Pp3c7_5100V3.1 No alias serine/arginine-rich 22 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007029 endoplasmic reticulum organization IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 88 103
IPR000504 RRM_dom 4 61
No external refs found!