AT1G15480

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0001224 (LandPlants) Phylogenetic Tree(s): OG_05_0001224_tree ,
OG_06_0002515 (SeedPlants) Phylogenetic Tree(s): OG_06_0002515_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G15480
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
AT3G15590	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.06	Archaeplastida
GSVIVT01020534001	No alias	Pentatricopeptide repeat-containing protein At2g20710,...	0.04	Archaeplastida
GSVIVT01033642001	No alias	Pentatricopeptide repeat-containing protein At1g80270,...	0.02	Archaeplastida
Gb_03507	No alias	Pentatricopeptide repeat-containing protein At4g02820,...	0.03	Archaeplastida
LOC_Os02g55310.1	No alias	Pentatricopeptide repeat-containing protein At5g27460...	0.07	Archaeplastida
LOC_Os10g35730.1	No alias	Pentatricopeptide repeat-containing protein At4g02820,...	0.06	Archaeplastida
LOC_Os12g34340.1	No alias	Pentatricopeptide repeat-containing protein At4g02820,...	0.04	Archaeplastida
MA_492314g0010	No alias	RNA editing factor (POCO)	0.03	Archaeplastida
Pp3c18_8600V3.1	No alias	PENTATRICOPEPTIDE REPEAT 596	0.02	Archaeplastida
Smo412643	No alias	Pentatricopeptide repeat-containing protein At1g07590,...	0.03	Archaeplastida
Smo413483	No alias	Pentatricopeptide repeat-containing protein At1g80270,...	0.04	Archaeplastida
Smo421992	No alias	Pentatricopeptide repeat-containing protein At3g15590,...	0.04	Archaeplastida
Smo444770	No alias	Pentatricopeptide repeat-containing protein At3g15590,...	0.03	Archaeplastida
Solyc01g079320.4.1	No alias	Pentatricopeptide repeat-containing protein At1g02370,...	0.05	Archaeplastida
Solyc01g089870.3.1	No alias	Pentatricopeptide repeat-containing protein At1g02150...	0.02	Archaeplastida
Solyc07g063220.4.1	No alias	Pentatricopeptide repeat-containing protein At4g21705,...	0.05	Archaeplastida
Zm00001e012594_P001	No alias	Pentatricopeptide repeat-containing protein At4g21705,...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	RCA	Interproscan
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006312	mitotic recombination	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007129	synapsis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0042991	obsolete transcription factor import into nucleus	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000257	nitrilase activity	IEP	Neighborhood
CC	GO:0000418	RNA polymerase IV complex	IEP	Neighborhood
CC	GO:0000419	RNA polymerase V complex	IEP	Neighborhood
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Neighborhood
BP	GO:0000912	assembly of actomyosin apparatus involved in cytokinesis	IEP	Neighborhood
BP	GO:0000914	phragmoplast assembly	IEP	Neighborhood
BP	GO:0000966	RNA 5'-end processing	IEP	Neighborhood
BP	GO:0001682	tRNA 5'-leader removal	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004526	ribonuclease P activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Neighborhood
CC	GO:0005635	nuclear envelope	IEP	Neighborhood
CC	GO:0005665	RNA polymerase II, core complex	IEP	Neighborhood
CC	GO:0005819	spindle	IEP	Neighborhood
CC	GO:0005874	microtubule	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	Neighborhood
BP	GO:0006997	nucleus organization	IEP	Neighborhood
BP	GO:0007020	microtubule nucleation	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
CC	GO:0009524	phragmoplast	IEP	Neighborhood
BP	GO:0009553	embryo sac development	IEP	Neighborhood
BP	GO:0009687	abscisic acid metabolic process	IEP	Neighborhood
BP	GO:0009688	abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0009749	response to glucose	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016074	snoRNA metabolic process	IEP	Neighborhood
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016815	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
CC	GO:0030880	RNA polymerase complex	IEP	Neighborhood
BP	GO:0031109	microtubule polymerization or depolymerization	IEP	Neighborhood
CC	GO:0031967	organelle envelope	IEP	Neighborhood
CC	GO:0031975	envelope	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034471	ncRNA 5'-end processing	IEP	Neighborhood
BP	GO:0034504	protein localization to nucleus	IEP	Neighborhood
BP	GO:0043144	snoRNA processing	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043288	apocarotenoid metabolic process	IEP	Neighborhood
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
BP	GO:0046165	alcohol biosynthetic process	IEP	Neighborhood
BP	GO:0046785	microtubule polymerization	IEP	Neighborhood
BP	GO:0048768	root hair cell tip growth	IEP	Neighborhood
BP	GO:0051258	protein polymerization	IEP	Neighborhood
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0090435	protein localization to nuclear envelope	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
CC	GO:0099080	supramolecular complex	IEP	Neighborhood
CC	GO:0099081	supramolecular polymer	IEP	Neighborhood
BP	GO:0099116	tRNA 5'-end processing	IEP	Neighborhood
CC	GO:0099512	supramolecular fiber	IEP	Neighborhood
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
BP	GO:1902407	assembly of actomyosin apparatus involved in mitotic cytokinesis	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
BP	GO:1902644	tertiary alcohol metabolic process	IEP	Neighborhood
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	249	307
IPR002885	Pentatricopeptide_repeat	494	551
IPR002885	Pentatricopeptide_repeat	470	489
IPR002885	Pentatricopeptide_repeat	341	360
IPR002885	Pentatricopeptide_repeat	435	464

External Links

No external refs found!

AT1G15480

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation