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  5. Zm00001e036528_P001

Zm00001e036528_P001


Description : Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana (sp|q8rwb1|srl1_arath : 377.0)


Gene families : OG0004742 (Archaeplastida) Phylogenetic Tree(s): OG0004742_tree ,
OG_05_0004399 (LandPlants) Phylogenetic Tree(s): OG_05_0004399_tree ,
OG_06_0007836 (SeedPlants) Phylogenetic Tree(s): OG_06_0007836_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e036528_P001
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00011550 evm_27.TU.AmTr_v1... Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT5G37370 ATSRL1 PRP38 family protein 0.04 Archaeplastida
LOC_Os05g08600.2 No alias Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis... 0.04 Archaeplastida
Smo83934 No alias Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc04g014560.4.1 No alias Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005037 PRP38 7 161
No external refs found!