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  5. Zm00001e036817_P002

Zm00001e036817_P002


Description : E3 ubiquitin ligase (PUB)


Gene families : OG0001274 (Archaeplastida) Phylogenetic Tree(s): OG0001274_tree ,
OG_05_0010903 (LandPlants) Phylogenetic Tree(s): OG_05_0010903_tree ,
OG_06_0010832 (SeedPlants) Phylogenetic Tree(s): OG_06_0010832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e036817_P002
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00145170 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01013395001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01024723001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_23646 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os03g45420.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os06g16410.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os12g17900.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Pp3c18_14130V3.1 No alias ARM repeat superfamily protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Neighborhood
MF GO:0004620 phospholipase activity IEP Neighborhood
MF GO:0004629 phospholipase C activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009584 detection of visible light IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
BP GO:0018298 protein-chromophore linkage IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003613 Ubox_domain 221 295
No external refs found!