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Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03990.1); Has 215 Blast hits to 164 proteins in 38 species: Archae - 0; Bacteria - 35; Metazoa - 16; Fungi - 18; Plants - 121; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Gene families : OG0004841 (Archaeplastida) Phylogenetic Tree(s): OG0004841_tree ,
OG_05_0003340 (LandPlants) Phylogenetic Tree(s): OG_05_0003340_tree ,
OG_06_0002769 (SeedPlants) Phylogenetic Tree(s): OG_06_0002769_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT3G51940 | |
| Cluster | HCCA: Cluster_23 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Solyc01g068170.3.1 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Neighborhood |
| BP | GO:0000412 | histone peptidyl-prolyl isomerization | IEP | Neighborhood |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Neighborhood |
| MF | GO:0001085 | RNA polymerase II transcription factor binding | IEP | Neighborhood |
| MF | GO:0001091 | RNA polymerase II basal transcription factor binding | IEP | Neighborhood |
| MF | GO:0001093 | TFIIB-class transcription factor binding | IEP | Neighborhood |
| MF | GO:0001098 | basal transcription machinery binding | IEP | Neighborhood |
| MF | GO:0001099 | basal RNA polymerase II transcription machinery binding | IEP | Neighborhood |
| MF | GO:0005527 | macrolide binding | IEP | Neighborhood |
| MF | GO:0005528 | FK506 binding | IEP | Neighborhood |
| CC | GO:0005654 | nucleoplasm | IEP | Neighborhood |
| CC | GO:0005730 | nucleolus | IEP | Neighborhood |
| CC | GO:0005794 | Golgi apparatus | IEP | Neighborhood |
| CC | GO:0005801 | cis-Golgi network | IEP | Neighborhood |
| BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Neighborhood |
| BP | GO:0006334 | nucleosome assembly | IEP | Neighborhood |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Neighborhood |
| BP | GO:0006891 | intra-Golgi vesicle-mediated transport | IEP | Neighborhood |
| BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood |
| BP | GO:0007017 | microtubule-based process | IEP | Neighborhood |
| MF | GO:0008134 | transcription factor binding | IEP | Neighborhood |
| BP | GO:0009218 | pyrimidine ribonucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0009220 | pyrimidine ribonucleotide biosynthetic process | IEP | Neighborhood |
| BP | GO:0009560 | embryo sac egg cell differentiation | IEP | Neighborhood |
| BP | GO:0009606 | tropism | IEP | Neighborhood |
| BP | GO:0009629 | response to gravity | IEP | Neighborhood |
| BP | GO:0009630 | gravitropism | IEP | Neighborhood |
| BP | GO:0009870 | defense response signaling pathway, resistance gene-dependent | IEP | Neighborhood |
| BP | GO:0009934 | regulation of meristem structural organization | IEP | Neighborhood |
| BP | GO:0010026 | trichome differentiation | IEP | Neighborhood |
| BP | GO:0031497 | chromatin assembly | IEP | Neighborhood |
| BP | GO:0031507 | heterochromatin assembly | IEP | Neighborhood |
| CC | GO:0033186 | CAF-1 complex | IEP | Neighborhood |
| BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
| MF | GO:0042393 | histone binding | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| BP | GO:0055062 | phosphate ion homeostasis | IEP | Neighborhood |
| BP | GO:0055081 | anion homeostasis | IEP | Neighborhood |
| BP | GO:0055083 | monovalent inorganic anion homeostasis | IEP | Neighborhood |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
| MF | GO:0070063 | RNA polymerase binding | IEP | Neighborhood |
| BP | GO:0070828 | heterochromatin organization | IEP | Neighborhood |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
| BP | GO:0072505 | divalent inorganic anion homeostasis | IEP | Neighborhood |
| BP | GO:0072506 | trivalent inorganic anion homeostasis | IEP | Neighborhood |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |