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  5. AT3G52100

AT3G52100


Description : RING/FYVE/PHD-type zinc finger family protein


Gene families : OG0004111 (Archaeplastida) Phylogenetic Tree(s): OG0004111_tree ,
OG_05_0003173 (LandPlants) Phylogenetic Tree(s): OG_05_0003173_tree ,
OG_06_0002779 (SeedPlants) Phylogenetic Tree(s): OG_06_0002779_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G52100
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
LOC_Os12g34330.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e018296_P003 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e039745_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
BP GO:0002229 defense response to oomycetes IEP Neighborhood
BP GO:0002239 response to oomycetes IEP Neighborhood
BP GO:0002831 regulation of response to biotic stimulus IEP Neighborhood
MF GO:0004709 MAP kinase kinase kinase activity IEP Neighborhood
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP Neighborhood
CC GO:0005769 early endosome IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
BP GO:0009691 cytokinin biosynthetic process IEP Neighborhood
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP Neighborhood
MF GO:0009824 AMP dimethylallyltransferase activity IEP Neighborhood
BP GO:0010257 NADH dehydrogenase complex assembly IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032101 regulation of response to external stimulus IEP Neighborhood
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP Neighborhood
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0052381 tRNA dimethylallyltransferase activity IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0098542 defense response to other organism IEP Neighborhood
BP GO:1900150 regulation of defense response to fungus IEP Neighborhood
BP GO:1900424 regulation of defense response to bacterium IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
BP GO:1901419 regulation of response to alcohol IEP Neighborhood
BP GO:1901420 negative regulation of response to alcohol IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
BP GO:1905957 regulation of cellular response to alcohol IEP Neighborhood
BP GO:1905958 negative regulation of cellular response to alcohol IEP Neighborhood
BP GO:2000031 regulation of salicylic acid mediated signaling pathway IEP Neighborhood
BP GO:2001023 regulation of response to drug IEP Neighborhood
BP GO:2001038 regulation of cellular response to drug IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!