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  5. Zm00001e037309_P002

Zm00001e037309_P002


Description : class-I histone deacetylase. deacetylase component HDA19 of SNL-HDA19 histone deacetylase complex


Gene families : OG0000845 (Archaeplastida) Phylogenetic Tree(s): OG0000845_tree ,
OG_05_0001102 (LandPlants) Phylogenetic Tree(s): OG_05_0001102_tree ,
OG_06_0064896 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e037309_P002
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Cre09.g387393 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Gb_07358 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida
Gb_10850 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 41 328
No external refs found!