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  5. Zm00001e037464_P001

Zm00001e037464_P001


Description : component HAF/TAF1 of SAGA transcription co-activator complex. component HAF/TAF1 of TFIId basal transcription regulation complex. protein kinase (TAF)


Gene families : OG0002996 (Archaeplastida) Phylogenetic Tree(s): OG0002996_tree ,
OG_05_0003348 (LandPlants) Phylogenetic Tree(s): OG_05_0003348_tree ,
OG_06_0005183 (SeedPlants) Phylogenetic Tree(s): OG_06_0005183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e037464_P001
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00132750 evm_27.TU.AmTr_v1... Protein modification.phosphorylation.atypical kinase... 0.05 Archaeplastida
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.11 Archaeplastida
Cpa|evm.model.tig00020903.20 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Cre10.g425501 No alias Transcription initiation factor TFIID subunit 1 OS=Oryza... 0.04 Archaeplastida
GSVIVT01020528001 No alias Protein modification.phosphorylation.atypical kinase... 0.09 Archaeplastida
LOC_Os06g43790.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.09 Archaeplastida
MA_10432545g0020 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.02 Archaeplastida
Mp5g22790.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.1 Archaeplastida
Pp3c10_350V3.1 No alias HAC13 protein (HAC13) 0.06 Archaeplastida
Pp3c14_1870V3.1 No alias HAC13 protein (HAC13) 0.02 Archaeplastida
Smo409957 No alias Protein modification.phosphorylation.atypical kinase... 0.05 Archaeplastida
Solyc07g006820.4.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR009067 TAF_II_230-bd 21 65
IPR022591 TFIID_sub1_DUF3591 556 1124
IPR000626 Ubiquitin_dom 645 710
IPR001487 Bromodomain 1698 1771
No external refs found!