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  5. AT3G52790

AT3G52790


Description : peptidoglycan-binding LysM domain-containing protein


Gene families : OG0001948 (Archaeplastida) Phylogenetic Tree(s): OG0001948_tree ,
OG_05_0001269 (LandPlants) Phylogenetic Tree(s): OG_05_0001269_tree ,
OG_06_0000764 (SeedPlants) Phylogenetic Tree(s): OG_06_0000764_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G52790
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00156520 evm_27.TU.AmTr_v1... No description available 0.07 Archaeplastida
AT5G62150 No alias peptidoglycan-binding LysM domain-containing protein 0.05 Archaeplastida
Gb_39268 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10325924g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_157865g0010 No alias Actin-1 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
MA_427792g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_8389288g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc10g083410.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0016998 cell wall macromolecule catabolic process ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0007043 cell-cell junction assembly IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008936 nicotinamidase activity IEP Neighborhood
BP GO:0009267 cellular response to starvation IEP Neighborhood
BP GO:0009698 phenylpropanoid metabolic process IEP Neighborhood
BP GO:0009699 phenylpropanoid biosynthetic process IEP Neighborhood
BP GO:0009751 response to salicylic acid IEP Neighborhood
BP GO:0009785 blue light signaling pathway IEP Neighborhood
BP GO:0009806 lignan metabolic process IEP Neighborhood
BP GO:0009807 lignan biosynthetic process IEP Neighborhood
BP GO:0010053 root epidermal cell differentiation IEP Neighborhood
BP GO:0010054 trichoblast differentiation IEP Neighborhood
BP GO:0010106 cellular response to iron ion starvation IEP Neighborhood
BP GO:0010167 response to nitrate IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015706 nitrate transport IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0021700 developmental maturation IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0030522 intracellular receptor signaling pathway IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0031667 response to nutrient levels IEP Neighborhood
BP GO:0031669 cellular response to nutrient levels IEP Neighborhood
BP GO:0034329 cell junction assembly IEP Neighborhood
BP GO:0034330 cell junction organization IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0042594 response to starvation IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
CC GO:0044426 cell wall part IEP Neighborhood
CC GO:0044462 external encapsulating structure part IEP Neighborhood
BP GO:0044550 secondary metabolite biosynthetic process IEP Neighborhood
BP GO:0045216 cell-cell junction organization IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
CC GO:0048226 Casparian strip IEP Neighborhood
BP GO:0048469 cell maturation IEP Neighborhood
BP GO:0048764 trichoblast maturation IEP Neighborhood
BP GO:0048765 root hair cell differentiation IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0071483 cellular response to blue light IEP Neighborhood
BP GO:0071695 anatomical structure maturation IEP Neighborhood
BP GO:0090627 plant epidermal cell differentiation IEP Neighborhood
MF GO:1990135 flavonoid sulfotransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR018392 LysM_dom 64 105
No external refs found!