AT3G52980


Description : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein


Gene families : OG0000743 (Archaeplastida) Phylogenetic Tree(s): OG0000743_tree ,
OG_05_0000692 (LandPlants) Phylogenetic Tree(s): OG_05_0000692_tree ,
OG_06_0002919 (SeedPlants) Phylogenetic Tree(s): OG_06_0002919_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G52980
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
MA_479847g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009505 plant-type cell wall IDA Interproscan
Type GO Term Name Evidence Source
MF GO:0004845 uracil phosphoribosyltransferase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019953 sexual reproduction IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044703 multi-organism reproductive process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR025605 OST-HTH/LOTUS_dom 199 278
IPR000504 RRM_dom 316 361
No external refs found!