Zm00001e038325_P002

Description : DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica (sp|q10mh8|rh24_orysj : 1107.0)

Gene families : OG0007523 (Archaeplastida) Phylogenetic Tree(s): OG0007523_tree ,
OG_05_0008076 (LandPlants) Phylogenetic Tree(s): OG_05_0008076_tree ,
OG_06_0010194 (SeedPlants) Phylogenetic Tree(s): OG_06_0010194_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e038325_P002
Cluster	HCCA: Cluster_276

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00182070	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana	0.02	Archaeplastida
AT2G47330	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Archaeplastida
Cpa\|evm.model.tig00020903.17	No alias	DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa...	0.02	Archaeplastida
GSVIVT01028137001	No alias	DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana	0.05	Archaeplastida
Gb_12460	No alias	DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os03g19530.1	No alias	DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa...	0.04	Archaeplastida
MA_50249g0010	No alias	DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa...	0.04	Archaeplastida
Mp4g12240.1	No alias	DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis...	0.04	Archaeplastida
Pp3c1_21470V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
Smo51367	No alias	DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana	0.05	Archaeplastida
Solyc01g079330.3.1	No alias	DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis...	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
BP	GO:0002097	tRNA wobble base modification	IEP	Neighborhood
BP	GO:0002098	tRNA wobble uridine modification	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
MF	GO:0009982	pseudouridine synthase activity	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
CC	GO:0033588	Elongator holoenzyme complex	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	463	559
IPR011545	DEAD/DEAH_box_helicase_dom	243	413

External Links

No external refs found!

Zm00001e038325_P002

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation