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  5. Zm00001e038465_P002

Zm00001e038465_P002


Description : histone (H2A)


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0069263 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0063138 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038465_P002
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.1 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.04 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.04 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.07 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.07 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.03 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.04 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre17.g714100 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01002746001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.11 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_06384 No alias histone (H2A) 0.05 Archaeplastida
Gb_07070 No alias histone (H2A) 0.06 Archaeplastida
Gb_12570 No alias histone (H2A) 0.03 Archaeplastida
Gb_25326 No alias histone (H2A) 0.05 Archaeplastida
Gb_37579 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os01g31800.1 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.08 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.09 Archaeplastida
LOC_Os05g38640.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.07 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.06 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.06 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.06 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.05 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.08 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.05 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.06 Archaeplastida
MA_94328g0020 No alias histone (H2A) 0.02 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.07 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.02 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.03 Archaeplastida
Mp3g02370.1 No alias histone (H2A) 0.02 Archaeplastida
Pp3c5_1791V3.1 No alias histone H2A 10 0.04 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.02 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.02 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.09 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.08 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.11 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.09 Archaeplastida
Solyc11g073260.2.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0000930 gamma-tubulin complex IEP Neighborhood
CC GO:0000931 gamma-tubulin large complex IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
CC GO:0008274 gamma-tubulin ring complex IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009262 deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
BP GO:0031503 protein-containing complex localization IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0033566 gamma-tubulin complex localization IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034629 cellular protein-containing complex localization IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044450 microtubule organizing center part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 137 170
No external refs found!