1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e038469_P001

Zm00001e038469_P001


Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000771 (Archaeplastida) Phylogenetic Tree(s): OG0000771_tree ,
OG_05_0000645 (LandPlants) Phylogenetic Tree(s): OG_05_0000645_tree ,
OG_06_0008219 (SeedPlants) Phylogenetic Tree(s): OG_06_0008219_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038469_P001
Cluster HCCA: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
AT1G22760 PAB3 poly(A) binding protein 3 0.03 Archaeplastida
Cpa|evm.model.tig00021244.19 No alias Protein biosynthesis.translation initiation.mRNA... 0.01 Archaeplastida
Cpa|evm.model.tig00021244.20 No alias Protein biosynthesis.translation initiation.mRNA... 0.01 Archaeplastida
Smo74731 No alias Protein biosynthesis.translation initiation.mRNA... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 49 119
IPR000504 RRM_dom 330 398
IPR000504 RRM_dom 137 206
IPR000504 RRM_dom 227 295
IPR002004 PABP_HYD 567 632
No external refs found!