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  5. Zm00001e038493_P001

Zm00001e038493_P001


Description : E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana (sp|q940t5|rduf2_arath : 187.0)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0004757 (LandPlants) Phylogenetic Tree(s): OG_05_0004757_tree ,
OG_06_0002639 (SeedPlants) Phylogenetic Tree(s): OG_06_0002639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038493_P001
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00250160 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT2G15580 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G39720 RHC2A RING-H2 finger C2A 0.03 Archaeplastida
AT3G46620 No alias zinc finger (C3HC4-type RING finger) family protein 0.03 Archaeplastida
AT4G26400 No alias RING/U-box superfamily protein 0.02 Archaeplastida
GSVIVT01009934001 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01012890001 No alias No description available 0.03 Archaeplastida
GSVIVT01015309001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01020765001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_06048 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_30381 No alias Probable E3 ubiquitin-protein ligase RHC2A... 0.03 Archaeplastida
LOC_Os02g09820.1 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os03g16480.1 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os05g01940.1 No alias elicitor peptide precursor (proPEP) 0.03 Archaeplastida
LOC_Os09g17610.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10274793g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_19897g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_9328282g0010 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp3g17850.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 Archaeplastida
Pp3c1_42450V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo18753 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc08g067290.3.1 No alias AIP2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Zm00001e001202_P001 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e009715_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e029660_P001 No alias E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e038273_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008083 growth factor activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030545 receptor regulator activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
MF GO:0048018 receptor ligand activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010543 DUF1117 192 275
IPR001841 Znf_RING 134 176
No external refs found!