Zm00001e038727_P001

Description : DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana (sp|q9fnq1|dexhe_arath : 3046.0)

Gene families : OG0000989 (Archaeplastida) Phylogenetic Tree(s): OG0000989_tree ,
OG_05_0001451 (LandPlants) Phylogenetic Tree(s): OG_05_0001451_tree ,
OG_06_0001729 (SeedPlants) Phylogenetic Tree(s): OG_06_0001729_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e038727_P001
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00114710	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.05	Archaeplastida
AMTR_s00110p00146400	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH14...	0.05	Archaeplastida
AT5G61140	No alias	U5 small nuclear ribonucleoprotein helicase	0.03	Archaeplastida
Cpa\|evm.model.tig00000865.27	No alias	DExH-box ATP-dependent RNA helicase DExH12...	0.02	Archaeplastida
Cpa\|evm.model.tig00000865.28	No alias	DExH-box ATP-dependent RNA helicase DExH12...	0.01	Archaeplastida
Cre17.g744147	No alias	RNA processing.RNA splicing.spliceosome...	0.02	Archaeplastida
GSVIVT01007875001	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	Archaeplastida
GSVIVT01010769001	No alias	DExH-box ATP-dependent RNA helicase DExH12...	0.02	Archaeplastida
Gb_18049	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	Archaeplastida
Gb_27895	No alias	RNA helicase (Brr2)	0.03	Archaeplastida
LOC_Os02g01740.1	No alias	RNA helicase (Brr2)	0.03	Archaeplastida
LOC_Os03g11470.1	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.07	Archaeplastida
MA_10429486g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	Archaeplastida
MA_10434882g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.06	Archaeplastida
MA_81219g0020	No alias	DExH-box ATP-dependent RNA helicase DExH12...	0.04	Archaeplastida
MA_81219g0030	No alias	DExH-box ATP-dependent RNA helicase DExH12...	0.03	Archaeplastida
MA_823844g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.03	Archaeplastida
MA_930633g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	Archaeplastida
Mp7g00250.1	No alias	RNA helicase (Brr2)	0.02	Archaeplastida
Pp3c1_35880V3.1	No alias	U5 small nuclear ribonucleoprotein helicase, putative	0.06	Archaeplastida
Pp3c2_9850V3.1	No alias	U5 small nuclear ribonucleoprotein helicase	0.06	Archaeplastida
Smo178863	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.03	Archaeplastida
Smo410613	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.02	Archaeplastida
Solyc06g069480.3.1	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.05	Archaeplastida
Solyc06g071620.3.1	No alias	RNA helicase (Brr2)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004179	Sec63-dom	1770	2078
IPR011545	DEAD/DEAH_box_helicase_dom	438	611
IPR001650	Helicase_C	666	813
IPR001650	Helicase_C	1556	1649
IPR004179	Sec63-dom	936	1242
IPR011545	DEAD/DEAH_box_helicase_dom	1286	1451

External Links

No external refs found!

Zm00001e038727_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation