Zm00001e038859_P001

Description : component RPSa of SSU proteome

Gene families : OG0002241 (Archaeplastida) Phylogenetic Tree(s): OG0002241_tree ,
OG_05_0002670 (LandPlants) Phylogenetic Tree(s): OG_05_0002670_tree ,
OG_06_0002731 (SeedPlants) Phylogenetic Tree(s): OG_06_0002731_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e038859_P001
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00244660	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
AMTR_s00041p00084080	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
AT1G72370	P40, AP40, RPSAA, RP40	40s ribosomal protein SA	0.29	Archaeplastida
AT3G04770	RPSAb	40s ribosomal protein SA B	0.04	Archaeplastida
Cre10.g432800	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	Archaeplastida
GSVIVT01016695001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.21	Archaeplastida
Gb_02349	No alias	component RPSa of SSU proteome	0.04	Archaeplastida
Gb_10091	No alias	component RPSa of SSU proteome	0.04	Archaeplastida
LOC_Os03g08440.1	No alias	component RPSa of SSU proteome	0.11	Archaeplastida
LOC_Os07g42450.1	No alias	component RPSa of SSU proteome	0.26	Archaeplastida
MA_10436984g0020	No alias	component RPSa of SSU proteome	0.12	Archaeplastida
MA_112104g0010	No alias	component RPSa of SSU proteome	0.15	Archaeplastida
Mp2g26290.1	No alias	component RPSa of SSU proteome	0.36	Archaeplastida
Pp3c14_15680V3.1	No alias	40s ribosomal protein SA B	0.02	Archaeplastida
Pp3c14_15700V3.1	No alias	40s ribosomal protein SA B	0.12	Archaeplastida
Pp3c14_17310V3.1	No alias	40s ribosomal protein SA B	0.15	Archaeplastida
Pp3c17_17600V3.1	No alias	40s ribosomal protein SA	0.26	Archaeplastida
Pp3c1_24120V3.1	No alias	40s ribosomal protein SA	0.12	Archaeplastida
Solyc03g019780.4.1	No alias	component RPSa of SSU proteome	0.29	Archaeplastida
Solyc06g072120.3.1	No alias	component RPSa of SSU proteome	0.32	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006553	lysine metabolic process	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009085	lysine biosynthetic process	IEP	Neighborhood
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0046451	diaminopimelate metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_S2	23	117
IPR001865	Ribosomal_S2	122	187

External Links

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Zm00001e038859_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation