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AT3G53690


Description : RING/U-box superfamily protein


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0000889 (LandPlants) Phylogenetic Tree(s): OG_05_0000889_tree ,
OG_06_0000875 (SeedPlants) Phylogenetic Tree(s): OG_06_0000875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G53690
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.09 Archaeplastida
AT2G21420 No alias IBR domain containing protein 0.05 Archaeplastida
AT2G25370 No alias RING/U-box superfamily protein 0.08 Archaeplastida
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.04 Archaeplastida
AT3G45460 No alias IBR domain containing protein 0.09 Archaeplastida
AT3G45470 No alias IBR domain containing protein 0.09 Archaeplastida
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.09 Archaeplastida
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.05 Archaeplastida
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.1 Archaeplastida
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.09 Archaeplastida
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.11 Archaeplastida
AT3G45580 No alias RING/U-box protein with C6HC-type zinc finger 0.04 Archaeplastida
Gb_23736 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP Neighborhood
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Neighborhood
MF GO:0000987 proximal promoter sequence-specific DNA binding IEP Neighborhood
MF GO:0001067 regulatory region nucleic acid binding IEP Neighborhood
CC GO:0001673 male germ cell nucleus IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004108 citrate (Si)-synthase activity IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004860 protein kinase inhibitor activity IEP Neighborhood
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010098 suspensor development IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010214 seed coat development IEP Neighborhood
BP GO:0010222 stem vascular tissue pattern formation IEP Neighborhood
BP GO:0010332 response to gamma radiation IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0016233 telomere capping IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0019210 kinase inhibitor activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0030332 cyclin binding IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032204 regulation of telomere maintenance IEP Neighborhood
BP GO:0032504 multicellular organism reproduction IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0036440 citrate synthase activity IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043047 single-stranded telomeric DNA binding IEP Neighborhood
CC GO:0043073 germ cell nucleus IEP Neighborhood
BP GO:0043247 telomere maintenance in response to DNA damage IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0044212 transcription regulatory region DNA binding IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048598 embryonic morphogenesis IEP Neighborhood
BP GO:0048830 adventitious root development IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Neighborhood
BP GO:0080159 zygote elongation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:0098847 sequence-specific single stranded DNA binding IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Neighborhood
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 189 246
IPR002867 IBR_dom 265 314
No external refs found!