AT3G53740


Description : Ribosomal protein L36e family protein


Gene families : OG0002126 (Archaeplastida) Phylogenetic Tree(s): OG0002126_tree ,
OG_05_0001928 (LandPlants) Phylogenetic Tree(s): OG_05_0001928_tree ,
OG_06_0001842 (SeedPlants) Phylogenetic Tree(s): OG_06_0001842_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G53740
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00174520 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
AMTR_s00012p00179170 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
Cpa|evm.model.tig00021493.69 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 Archaeplastida
Cre12.g484050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.33 Archaeplastida
GSVIVT01026914001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 Archaeplastida
GSVIVT01028917001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 Archaeplastida
Gb_10248 No alias component RPL36 of LSU proteome component 0.14 Archaeplastida
Gb_27261 No alias component RPL36 of LSU proteome component 0.17 Archaeplastida
LOC_Os01g62350.1 No alias component RPL36 of LSU proteome component 0.19 Archaeplastida
LOC_Os05g38520.1 No alias component RPL36 of LSU proteome component 0.29 Archaeplastida
MA_10430792g0010 No alias component RPL36 of LSU proteome component 0.2 Archaeplastida
MA_24782g0010 No alias component RPL36 of LSU proteome component 0.14 Archaeplastida
MA_69756g0010 No alias component RPL36 of LSU proteome component 0.07 Archaeplastida
Mp1g05460.1 No alias component RPL36 of LSU proteome component 0.3 Archaeplastida
Pp3c14_19960V3.1 No alias Ribosomal protein L36e family protein 0.37 Archaeplastida
Pp3c1_32310V3.1 No alias Ribosomal protein L36e family protein 0.19 Archaeplastida
Pp3c2_9650V3.1 No alias Ribosomal protein L36e family protein 0.32 Archaeplastida
Smo267958 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Smo439710 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Solyc01g094560.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc03g025520.4.1 No alias component RPL36 of LSU proteome component 0.16 Archaeplastida
Solyc06g036050.4.1 No alias component RPL36 of LSU proteome component 0.1 Archaeplastida
Zm00001e027238_P001 No alias component RPL36 of LSU proteome component 0.29 Archaeplastida
Zm00001e031832_P002 No alias component RPL36 of LSU proteome component 0.17 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
Type GO Term Name Evidence Source
MF GO:0000036 acyl carrier activity IEP Neighborhood
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000741 karyogamy IEP Neighborhood
MF GO:0001072 transcription antitermination factor activity, RNA binding IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004550 nucleoside diphosphate kinase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005763 mitochondrial small ribosomal subunit IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
MF GO:0008320 protein transmembrane transporter activity IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0009260 ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009266 response to temperature stimulus IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009955 adaxial/abaxial pattern specification IEP Neighborhood
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
MF GO:0022884 macromolecule transmembrane transporter activity IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
BP GO:0031125 rRNA 3'-end processing IEP Neighborhood
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Neighborhood
BP GO:0031564 transcription antitermination IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034644 cellular response to UV IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP Neighborhood
BP GO:0046390 ribose phosphate biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0048569 post-embryonic animal organ development IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0051192 prosthetic group binding IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0071493 cellular response to UV-B IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1904680 peptide transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000509 Ribosomal_L36e 8 92
No external refs found!