AT3G53820

Description : C2H2 and C2HC zinc fingers superfamily protein

Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0000388 (SeedPlants) Phylogenetic Tree(s): OG_06_0000388_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53820
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00086480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	Archaeplastida
AMTR_s00079p00169240	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	Archaeplastida
AMTR_s00082p00184630	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
AMTR_s00088p00145510	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	Archaeplastida
AMTR_s00124p00105750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
AMTR_s00138p00067840	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.02	Archaeplastida
AMTR_s00149p00097070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.02	Archaeplastida
AMTR_s00150p00049910	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	Archaeplastida
AT1G68360	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.05	Archaeplastida
AT1G80730	ZFP1, ATZFP1	zinc-finger protein 1	0.04	Archaeplastida
AT2G42410	ZFP11, ATZFP11	zinc finger protein 11	0.05	Archaeplastida
AT3G09290	TAC1	telomerase activator1	0.04	Archaeplastida
AT3G23130	SUP, FLO10, FON1	C2H2 and C2HC zinc fingers superfamily protein	0.04	Archaeplastida
AT5G10970	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.12	Archaeplastida
AT5G14010	KNU	C2H2 and C2HC zinc fingers superfamily protein	0.04	Archaeplastida
AT5G25160	ZFP3	zinc finger protein 3	0.06	Archaeplastida
AT5G57520	ATZFP2, ZFP2	zinc finger protein 2	0.05	Archaeplastida
GSVIVT01011868001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	Archaeplastida
GSVIVT01016493001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	Archaeplastida
GSVIVT01027720001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	Archaeplastida
GSVIVT01031007001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.07	Archaeplastida
Gb_12546	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Gb_26860	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
LOC_Os01g04120.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os01g32920.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
LOC_Os05g20930.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
LOC_Os07g01180.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os07g23450.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os07g40300.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
LOC_Os09g26200.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os09g26210.1	No alias	C2H2 zinc finger transcription factor	0.06	Archaeplastida
LOC_Os09g27320.1	No alias	C2H2 zinc finger transcription factor	0.05	Archaeplastida
LOC_Os09g38610.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
LOC_Os11g48000.1	No alias	C2H2 zinc finger transcription factor	0.05	Archaeplastida
MA_10430024g0010	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
MA_123573g0010	No alias	C2H2 zinc finger transcription factor	0.06	Archaeplastida
MA_2800g0010	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
MA_357706g0010	No alias	C2H2 zinc finger transcription factor	0.05	Archaeplastida
MA_424g0010	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
MA_48488g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_54742g0010	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
MA_57615g0010	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
MA_5999529g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Pp3c20_10790V3.1	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.02	Archaeplastida
Pp3c23_800V3.1	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.02	Archaeplastida
Solyc03g117070.1.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc05g006310.3.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc05g009180.1.1	No alias	C2H2 zinc finger transcription factor	0.06	Archaeplastida
Solyc09g011120.1.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc09g066250.1.1	No alias	no hits & (original description: none)	0.09	Archaeplastida
Solyc09g089590.1.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc10g049870.1.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc10g078990.1.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc10g084910.3.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc11g011890.2.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e009854_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e011910_P001	No alias	C2H2 zinc finger transcription factor	0.06	Archaeplastida
Zm00001e013379_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e013845_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e016256_P001	No alias	C2H2 zinc finger transcription factor	0.05	Archaeplastida
Zm00001e017009_P001	No alias	C2H2 zinc finger transcription factor	0.05	Archaeplastida
Zm00001e020926_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e022212_P001	No alias	C2H2 zinc finger transcription factor	0.07	Archaeplastida
Zm00001e032639_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e034883_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e035448_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e036816_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Zm00001e037946_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0000304	response to singlet oxygen	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0007584	response to nutrient	IEP	Neighborhood
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Neighborhood
MF	GO:0009975	cyclase activity	IEP	Neighborhood
BP	GO:0010263	tricyclic triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0010683	tricyclic triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0018904	ether metabolic process	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0019852	L-ascorbic acid metabolic process	IEP	Neighborhood
BP	GO:0019853	L-ascorbic acid biosynthetic process	IEP	Neighborhood
MF	GO:0031559	oxidosqualene cyclase activity	IEP	Neighborhood
MF	GO:0034075	arabidiol synthase activity	IEP	Neighborhood
BP	GO:0042343	indole glucosinolate metabolic process	IEP	Neighborhood
MF	GO:0042349	guiding stereospecific synthesis activity	IEP	Neighborhood
BP	GO:0045338	farnesyl diphosphate metabolic process	IEP	Neighborhood
MF	GO:0045735	nutrient reservoir activity	IEP	Neighborhood
MF	GO:0050105	L-gulonolactone oxidase activity	IEP	Neighborhood
BP	GO:1901503	ether biosynthetic process	IEP	Neighborhood
BP	GO:1901598	(-)-pinoresinol metabolic process	IEP	Neighborhood
BP	GO:1901599	(-)-pinoresinol biosynthetic process	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G53820

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation