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  5. Zm00001e039070_P001

Zm00001e039070_P001


Description : RS31/40/41 RNA splicing factor


Gene families : OG0001617 (Archaeplastida) Phylogenetic Tree(s): OG0001617_tree ,
OG_05_0001638 (LandPlants) Phylogenetic Tree(s): OG_05_0001638_tree ,
OG_06_0001180 (SeedPlants) Phylogenetic Tree(s): OG_06_0001180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039070_P001
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AT3G61860 At-RS31, RS31,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
AT4G25500 ATRSP40,... arginine/serine-rich splicing factor 35 0.02 Archaeplastida
AT5G52040 At-RS41, RS41, ATRSP41 RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000852.9 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Cre16.g674250 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0030915 Smc5-Smc6 complex IEP Neighborhood
BP GO:0051259 protein complex oligomerization IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0106068 SUMO ligase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 4 61
IPR000504 RRM_dom 95 157
No external refs found!