AT3G53890


Description : Ribosomal protein S21e


Gene families : OG0002316 (Archaeplastida) Phylogenetic Tree(s): OG0002316_tree ,
OG_05_0003260 (LandPlants) Phylogenetic Tree(s): OG_05_0003260_tree ,
OG_06_0003911 (SeedPlants) Phylogenetic Tree(s): OG_06_0003911_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G53890
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00200410 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Cre03.g203450 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
GSVIVT01017756001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 Archaeplastida
GSVIVT01031151001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
Gb_27652 No alias component RPS21 of SSU proteome 0.17 Archaeplastida
Gb_35516 No alias component RPS21 of SSU proteome 0.1 Archaeplastida
LOC_Os03g46490.1 No alias component RPS21 of SSU proteome 0.11 Archaeplastida
MA_73657g0010 No alias component RPS21 of SSU proteome 0.1 Archaeplastida
Mp4g22150.1 No alias component RPS21 of SSU proteome 0.16 Archaeplastida
Pp3c12_25030V3.1 No alias Ribosomal protein S21e 0.19 Archaeplastida
Pp3c24_8160V3.1 No alias Ribosomal protein S21e 0.06 Archaeplastida
Pp3c26_3000V3.1 No alias Ribosomal protein S21e 0.16 Archaeplastida
Pp3c4_3220V3.1 No alias Ribosomal protein S21e 0.13 Archaeplastida
Smo271040 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Solyc01g066840.3.1 No alias component RPS21 of SSU proteome 0.09 Archaeplastida
Solyc04g074910.3.1 No alias component RPS21 of SSU proteome 0.1 Archaeplastida
Zm00001e001637_P002 No alias component RPS21 of SSU proteome 0.16 Archaeplastida
Zm00001e011684_P002 No alias component RPS21 of SSU proteome 0.15 Archaeplastida
Zm00001e031393_P002 No alias component RPS21 of SSU proteome 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA Interproscan
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
MF GO:0003735 structural constituent of ribosome IBA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0006414 translational elongation IBA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
BP GO:0042274 ribosomal small subunit biogenesis IBA Interproscan
Type GO Term Name Evidence Source
CC GO:0000785 chromatin IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0004550 nucleoside diphosphate kinase activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
MF GO:0008320 protein transmembrane transporter activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009853 photorespiration IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Neighborhood
BP GO:0016925 protein sumoylation IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
MF GO:0022884 macromolecule transmembrane transporter activity IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030527 structural constituent of chromatin IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030686 90S preribosome IEP Neighborhood
BP GO:0030865 cortical cytoskeleton organization IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0031122 cytoplasmic microtubule organization IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
BP GO:0043094 cellular metabolic compound salvage IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043622 cortical microtubule organization IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:1904680 peptide transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001931 Ribosomal_S21e 1 77
No external refs found!