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  5. Zm00001e039114_P001

Zm00001e039114_P001


Description : component NOT1 of mRNA deadenylation CCR4-NOT complex


Gene families : OG0003850 (Archaeplastida) Phylogenetic Tree(s): OG0003850_tree ,
OG_05_0004130 (LandPlants) Phylogenetic Tree(s): OG_05_0004130_tree ,
OG_06_0004586 (SeedPlants) Phylogenetic Tree(s): OG_06_0004586_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039114_P001
Cluster HCCA: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
AT1G02080 No alias transcription regulators 0.03 Archaeplastida
Cpa|evm.model.tig00000767.19 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 Archaeplastida
Cre14.g632950 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 Archaeplastida
GSVIVT01000874001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 Archaeplastida
GSVIVT01018721001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 Archaeplastida
Gb_12251 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 Archaeplastida
LOC_Os10g40780.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 Archaeplastida
MA_42843g0010 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.02 Archaeplastida
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.02 Archaeplastida
Pp3c5_6540V3.1 No alias transcription regulators 0.03 Archaeplastida
Smo440060 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0030151 molybdenum ion binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
InterPro domains Description Start Stop
IPR032193 CNOT1_TTP_bind 652 812
IPR024557 CCR4-Not_Not1su_DUF3819 1318 1458
IPR007196 CCR4-Not_Not1_C 2008 2381
IPR032194 CNOT1_HEAT 470 615
IPR032191 CNOT1_CAF1_bind 968 1187
No external refs found!