Zm00001e039540_P003

Description : ubiquitin protease (USP7). deubiquitinase (UBP12-13)

Gene families : OG0000966 (Archaeplastida) Phylogenetic Tree(s): OG0000966_tree ,
OG_05_0001134 (LandPlants) Phylogenetic Tree(s): OG_05_0001134_tree ,
OG_06_0001034 (SeedPlants) Phylogenetic Tree(s): OG_06_0001034_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e039540_P003
Cluster	HCCA: Cluster_322

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00140970	evm_27.TU.AmTr_v1...	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana	0.06	Archaeplastida
AT3G11910	UBP13	ubiquitin-specific protease 13	0.08	Archaeplastida
AT5G06600	UBP12	ubiquitin-specific protease 12	0.04	Archaeplastida
Cpa\|evm.model.tig00000217.46	No alias	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00001366.11	No alias	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cpa\|evm.model.tig00021350.29	No alias	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00021350.30	No alias	Protein degradation.peptidase families.cysteine-type...	0.02	Archaeplastida
Cre07.g336200	No alias	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01022498001	No alias	Protein degradation.peptidase families.cysteine-type...	0.04	Archaeplastida
GSVIVT01034603001	No alias	Protein degradation.peptidase families.cysteine-type...	0.05	Archaeplastida
GSVIVT01037528001	No alias	Protein degradation.peptidase families.cysteine-type...	0.03	Archaeplastida
Gb_04866	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	Archaeplastida
Gb_34568	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	Archaeplastida
LOC_Os01g56490.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.06	Archaeplastida
LOC_Os07g06950.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.06	Archaeplastida
LOC_Os11g36470.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	Archaeplastida
LOC_Os12g30540.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.07	Archaeplastida
MA_10426331g0010	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	Archaeplastida
MA_10427483g0010	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	Archaeplastida
MA_10427483g0020	No alias	deubiquitinase (UBP12-13)	0.05	Archaeplastida
MA_75085g0010	No alias	deubiquitinase (UBP12-13)	0.05	Archaeplastida
Mp3g15430.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	Archaeplastida
Pp3c11_18780V3.1	No alias	ubiquitin-specific protease 12	0.03	Archaeplastida
Pp3c15_15710V3.1	No alias	ubiquitin-specific protease 12	0.05	Archaeplastida
Pp3c7_7420V3.1	No alias	ubiquitin-specific protease 12	0.04	Archaeplastida
Smo444302	No alias	Protein degradation.peptidase families.cysteine-type...	0.05	Archaeplastida
Solyc05g055090.4.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	Archaeplastida
Solyc10g081610.2.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	Archaeplastida
Solyc11g071700.2.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	Archaeplastida
Zm00001e019687_P003	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein-specific protease activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	ubiquitinyl hydrolase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Neighborhood
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005669	transcription factor TFIID complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Neighborhood
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
CC	GO:0008023	transcription elongation factor complex	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
CC	GO:0030014	CCR4-NOT complex	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031248	protein acetyltransferase complex	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043631	RNA polyadenylation	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
CC	GO:0070461	SAGA-type complex	IEP	Neighborhood
MF	GO:0070566	adenylyltransferase activity	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
CC	GO:1902493	acetyltransferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR029346	USP_C	890	1099
IPR024729	USP7_ICP0-binding_dom	628	880
IPR001394	Peptidase_C19_UCH	203	524
IPR002083	MATH/TRAF_dom	65	185

External Links

No external refs found!

Zm00001e039540_P003

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation