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  5. Zm00001e039654_P001

Zm00001e039654_P001


Description : monomeric E3 ubiquitin ligase (HECT)


Gene families : OG0001713 (Archaeplastida) Phylogenetic Tree(s): OG0001713_tree ,
OG_05_0001924 (LandPlants) Phylogenetic Tree(s): OG_05_0001924_tree ,
OG_06_0002093 (SeedPlants) Phylogenetic Tree(s): OG_06_0002093_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039654_P001
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00211330 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.14 Archaeplastida
AMTR_s00061p00204480 No alias Protein degradation.peptide tagging.Ubiquitin... 0.16 Archaeplastida
AT1G55860 UPL1 ubiquitin-protein ligase 1 0.1 Archaeplastida
AT1G70320 UPL2 ubiquitin-protein ligase 2 0.17 Archaeplastida
Cre01.g012450 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
GSVIVT01009206001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.11 Archaeplastida
GSVIVT01009208001 No alias E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana 0.14 Archaeplastida
GSVIVT01014697001 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana 0.08 Archaeplastida
GSVIVT01014698001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
Gb_17424 No alias monomeric E3 ubiquitin ligase (HECT) 0.11 Archaeplastida
Gb_21632 No alias monomeric E3 ubiquitin ligase (HECT) 0.07 Archaeplastida
Gb_26784 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Gb_26785 No alias monomeric E3 ubiquitin ligase (HECT) 0.04 Archaeplastida
LOC_Os09g07900.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.04 Archaeplastida
LOC_Os12g24080.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.09 Archaeplastida
MA_20049g0010 No alias monomeric E3 ubiquitin ligase (HECT) 0.15 Archaeplastida
MA_20049g0020 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_7295g0020 No alias E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Mp4g21620.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.05 Archaeplastida
Mp7g16120.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.03 Archaeplastida
Pp3c11_25020V3.1 No alias ubiquitin-protein ligase 1 0.14 Archaeplastida
Pp3c7_8070V3.1 No alias ubiquitin-protein ligase 1 0.1 Archaeplastida
Pp3c7_8076V3.1 No alias ubiquitin-protein ligase 1 0.12 Archaeplastida
Smo154179 No alias Protein degradation.peptide tagging.Ubiquitin... 0.12 Archaeplastida
Solyc04g076620.4.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.15 Archaeplastida
Solyc07g065630.4.1 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.16 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010309 E3_Ub_ligase_DUF908 248 416
IPR010309 E3_Ub_ligase_DUF908 112 197
IPR000569 HECT_dom 3332 3641
IPR010314 E3_Ub_ligase_DUF913 479 803
IPR015940 UBA 1299 1336
IPR025527 DUF4414 2562 2589
IPR025527 DUF4414 2601 2630
IPR025527 DUF4414 2639 2670
No external refs found!