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  5. Zm00001e039962_P001

Zm00001e039962_P001


Description : starch synthase (SSIII)


Gene families : OG0000161 (Archaeplastida) Phylogenetic Tree(s): OG0000161_tree ,
OG_05_0005539 (LandPlants) Phylogenetic Tree(s): OG_05_0005539_tree ,
OG_06_0006824 (SeedPlants) Phylogenetic Tree(s): OG_06_0006824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039962_P001
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AT1G11720 ATSS3, SS3 starch synthase 3 0.04 Archaeplastida
AT1G32900 No alias UDP-Glycosyltransferase superfamily protein 0.03 Archaeplastida
AT3G01180 SS2, AtSS2 starch synthase 2 0.03 Archaeplastida
AT5G24300 SSI1, ATSS1, SSI Glycogen/starch synthases, ADP-glucose type 0.04 Archaeplastida
Cre06.g282000 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
Cre16.g665800 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 Archaeplastida
Cre17.g721500 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
GSVIVT01011429001 No alias Carbohydrate metabolism.starch... 0.03 Archaeplastida
GSVIVT01012723001 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
LOC_Os06g06560.1 No alias starch synthase (SSI) 0.02 Archaeplastida
LOC_Os06g12450.1 No alias starch synthase (SSII) 0.02 Archaeplastida
LOC_Os08g09230.1 No alias starch synthase (SSIII) 0.07 Archaeplastida
MA_10429460g0010 No alias granule-bound starch (amylose) synthase 0.02 Archaeplastida
MA_10429460g0020 No alias Granule-bound starch synthase 1,... 0.03 Archaeplastida
MA_482181g0010 No alias Soluble starch synthase 1, chloroplastic/amyloplastic... 0.05 Archaeplastida
Mp1g23640.1 No alias granule-bound starch (amylose) synthase 0.04 Archaeplastida
Mp3g25350.1 No alias starch synthase (SSI) 0.03 Archaeplastida
Pp3c9_14980V3.1 No alias starch synthase 4 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004645 phosphorylase activity IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001296 Glyco_trans_1 1477 1596
IPR013534 Starch_synth_cat_dom 1227 1414
IPR005085 CBM25 969 1054
IPR005085 CBM25 1132 1216
IPR005085 CBM25 795 875
No external refs found!