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  5. Zm00001e039971_P001

Zm00001e039971_P001


Description : Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana (sp|q9fjy9|pp448_arath : 280.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0014034 (LandPlants) Phylogenetic Tree(s): OG_05_0014034_tree ,
OG_06_0013967 (SeedPlants) Phylogenetic Tree(s): OG_06_0013967_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039971_P001
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01003766001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
LOC_Os05g33920.1 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.03 Archaeplastida
LOC_Os06g15670.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os08g33700.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.02 Archaeplastida
LOC_Os10g30760.1 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
LOC_Os11g01860.1 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Zm00001e019452_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 71 119
IPR002885 Pentatricopeptide_repeat 46 68
IPR002885 Pentatricopeptide_repeat 180 200
IPR002885 Pentatricopeptide_repeat 274 301
IPR002885 Pentatricopeptide_repeat 311 339
IPR002885 Pentatricopeptide_repeat 349 371
IPR002885 Pentatricopeptide_repeat 243 272
No external refs found!