AT3G54780

Description : Zinc finger (C3HC4-type RING finger) family protein

Gene families : OG0000379 (Archaeplastida) Phylogenetic Tree(s): OG0000379_tree ,
OG_05_0000514 (LandPlants) Phylogenetic Tree(s): OG_05_0000514_tree ,
OG_06_0001859 (SeedPlants) Phylogenetic Tree(s): OG_06_0001859_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G54780

Target	Alias	Description	ECC score	Gene Family Method
AT1G08050	No alias	Zinc finger (C3HC4-type RING finger) family protein	0.04	Archaeplastida
AT2G22680	No alias	Zinc finger (C3HC4-type RING finger) family protein	0.02	Archaeplastida
Gb_01603	No alias	ubiquitin protein ligase (WAV3)	0.02	Archaeplastida
LOC_Os04g01160.1	No alias	ubiquitin protein ligase (WAV3)	0.03	Archaeplastida
LOC_Os08g03270.1	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.01	Archaeplastida
LOC_Os10g32740.1	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.01	Archaeplastida
MA_218345g0010	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Smo141910	No alias	No description available	0.01	Archaeplastida
Solyc05g056140.4.1	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Zm00001e000344_P001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Zm00001e004621_P001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.01	Archaeplastida
Zm00001e008822_P002	No alias	ubiquitin protein ligase (WAV3)	0.02	Archaeplastida
Zm00001e012729_P001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0048367	shoot system development	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002035	VWF_A	243	408
IPR032838	Vwaint_dom	577	649
IPR001841	Znf_RING	74	103

External Links

No external refs found!