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  5. Zm00001e040028_P004

Zm00001e040028_P004


Description : transcription factor (REM)


Gene families : OG0000741 (Archaeplastida) Phylogenetic Tree(s): OG0000741_tree ,
OG_05_0001199 (LandPlants) Phylogenetic Tree(s): OG_05_0001199_tree ,
OG_06_0001296 (SeedPlants) Phylogenetic Tree(s): OG_06_0001296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040028_P004
Cluster HCCA: Cluster_277

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00115450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.1 Archaeplastida
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.09 Archaeplastida
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.07 Archaeplastida
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.08 Archaeplastida
Gb_07025 No alias transcription factor (REM) 0.04 Archaeplastida
Gb_35990 No alias transcription factor (REM) 0.11 Archaeplastida
LOC_Os03g08620.1 No alias transcription factor (REM) 0.16 Archaeplastida
MA_10430774g0010 No alias No annotation 0.03 Archaeplastida
MA_10433064g0010 No alias transcription factor (REM) 0.06 Archaeplastida
MA_430451g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_59943g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp2g08790.1 No alias transcription factor (REM) 0.03 Archaeplastida
Pp3c14_19410V3.1 No alias AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
Pp3c17_16150V3.1 No alias AP2/B3-like transcriptional factor family protein 0.04 Archaeplastida
Pp3c1_15410V3.1 No alias AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
Pp3c2_5990V3.1 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
Smo413242 No alias No description available 0.02 Archaeplastida
Smo424732 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
Solyc01g108140.4.1 No alias transcription factor (REM) 0.09 Archaeplastida
Solyc04g079130.2.1 No alias transcription factor (REM) 0.13 Archaeplastida
Solyc06g007530.2.1 No alias transcription factor (REM) 0.02 Archaeplastida
Solyc06g034140.3.1 No alias transcription factor (REM) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 134 220
No external refs found!