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  5. Zm00001e040144_P001

Zm00001e040144_P001


Description : DNA-directed RNA polymerases IV and V subunit 2 OS=Arabidopsis thaliana (sp|q9lk40|nrpd2_arath : 1217.0)


Gene families : OG0000520 (Archaeplastida) Phylogenetic Tree(s): OG0000520_tree ,
OG_05_0002365 (LandPlants) Phylogenetic Tree(s): OG_05_0002365_tree ,
OG_06_0002538 (SeedPlants) Phylogenetic Tree(s): OG_06_0002538_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040144_P001
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g07480.1 No alias subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.04 Archaeplastida
MA_10434923g0010 No alias subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
InterPro domains Description Start Stop
IPR007642 RNA_pol_Rpb2_2 353 476
IPR007120 DNA-dir_RNAP_su2_dom 749 1121
IPR007644 RNA_pol_bsu_protrusion 128 524
IPR007646 RNA_pol_Rpb2_4 648 709
IPR007641 RNA_pol_Rpb2_7 1123 1223
IPR007645 RNA_pol_Rpb2_3 552 614
No external refs found!