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  5. Zm00001e040177_P002

Zm00001e040177_P002


Description : component RPS3 of SSU proteome


Gene families : OG0002305 (Archaeplastida) Phylogenetic Tree(s): OG0002305_tree ,
OG_05_0001961 (LandPlants) Phylogenetic Tree(s): OG_05_0001961_tree ,
OG_06_0002250 (SeedPlants) Phylogenetic Tree(s): OG_06_0002250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040177_P002
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00219330 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.28 Archaeplastida
AMTR_s00030p00157370 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
AT2G31610 No alias Ribosomal protein S3 family protein 0.06 Archaeplastida
AT3G53870 No alias Ribosomal protein S3 family protein 0.16 Archaeplastida
AT5G35530 No alias Ribosomal protein S3 family protein 0.46 Archaeplastida
Cpa|evm.model.tig00021462.41 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.37 Archaeplastida
Cre02.g102250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.38 Archaeplastida
GSVIVT01015110001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.28 Archaeplastida
GSVIVT01016775001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
GSVIVT01035451001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
Gb_26536 No alias component RPS3 of SSU proteome 0.16 Archaeplastida
Gb_26539 No alias component RPS3 of SSU proteome 0.04 Archaeplastida
LOC_Os03g38000.1 No alias component RPS3 of SSU proteome 0.39 Archaeplastida
LOC_Os07g41750.1 No alias component RPS3 of SSU proteome 0.19 Archaeplastida
MA_10436283g0010 No alias component RPS3 of SSU proteome 0.19 Archaeplastida
MA_120861g0010 No alias component RPS3 of SSU proteome 0.19 Archaeplastida
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.4 Archaeplastida
Pp3c11_22640V3.1 No alias Ribosomal protein S3 family protein 0.34 Archaeplastida
Pp3c15_21360V3.1 No alias Ribosomal protein S3 family protein 0.2 Archaeplastida
Pp3c16_3760V3.1 No alias Ribosomal protein S3 family protein 0.18 Archaeplastida
Pp3c5_5330V3.1 No alias Ribosomal protein S3 family protein 0.19 Archaeplastida
Pp3c7_2620V3.1 No alias Ribosomal protein S3 family protein 0.31 Archaeplastida
Pp3c9_12170V3.1 No alias Ribosomal protein S3 family protein 0.31 Archaeplastida
Smo270414 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
Smo270666 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
Smo438700 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Solyc07g041310.3.1 No alias component RPS3 of SSU proteome 0.28 Archaeplastida
Solyc08g061843.1.1 No alias component RPS3 of SSU proteome 0.35 Archaeplastida
Zm00001e035528_P001 No alias component RPS3 of SSU proteome 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 20 93
IPR001351 Ribosomal_S3_C 106 188
No external refs found!