AT3G55320 (PGP20)

Aliases : PGP20

Description : P-glycoprotein 20

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0002865 (LandPlants) Phylogenetic Tree(s): OG_05_0002865_tree ,
OG_06_0003291 (SeedPlants) Phylogenetic Tree(s): OG_06_0003291_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G55320
Cluster	HCCA: Cluster_163

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00254310	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.01	Archaeplastida
AMTR_s00018p00193700	evm_27.TU.AmTr_v1...	ABC transporter B family member 14 OS=Arabidopsis thaliana	0.01	Archaeplastida
AMTR_s00018p00193820	evm_27.TU.AmTr_v1...	ABC transporter B family member 1 OS=Arabidopsis thaliana	0.01	Archaeplastida
AMTR_s00045p00109940	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00049p00128080	evm_27.TU.AmTr_v1...	Putative multidrug resistance protein OS=Oryza sativa...	0.03	Archaeplastida
AMTR_s00145p00075460	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AT2G36910	PGP1, ABCB1, ATPGP1	ATP binding cassette subfamily B1	0.04	Archaeplastida
AT3G62150	PGP21	P-glycoprotein 21	0.02	Archaeplastida
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.02	Archaeplastida
GSVIVT01015306001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01017696001	No alias	Solute transport.primary active transport.ABC...	0.07	Archaeplastida
GSVIVT01025040001	No alias	Solute transport.primary active transport.ABC...	0.05	Archaeplastida
Gb_06993	No alias	serine carboxypeptidase. subfamily ABCB transporter	0.02	Archaeplastida
Gb_08702	No alias	subfamily ABCB transporter	0.07	Archaeplastida
Gb_08707	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_10215	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Gb_20009	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_27347	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Gb_31652	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_32125	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Gb_36497	No alias	subfamily ABCB transporter	0.01	Archaeplastida
LOC_Os01g34970.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os01g74470.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
LOC_Os08g05710.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_1824g0020	No alias	subfamily ABCB transporter	0.06	Archaeplastida
Pp3c17_16450V3.1	No alias	ATP binding cassette subfamily B19	0.01	Archaeplastida
Pp3c1_34680V3.1	No alias	P-glycoprotein 10	0.02	Archaeplastida
Pp3c9_13390V3.1	No alias	P-glycoprotein 6	0.01	Archaeplastida
Smo139408	No alias	Solute transport.primary active transport.ABC...	0.01	Archaeplastida
Solyc12g098840.3.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Zm00001e001258_P003	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Zm00001e003866_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e017444_P002	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e021746_P001	No alias	ABC transporter B family member 2 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e038462_P002	No alias	subfamily ABCB transporter	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009926	auxin polar transport	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0010048	vernalization response	RCA	Interproscan
BP	GO:0010315	auxin efflux	IBA	Interproscan
BP	GO:0010540	basipetal auxin transport	IBA	Interproscan
BP	GO:0010541	acropetal auxin transport	IBA	Interproscan
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010928	regulation of auxin mediated signaling pathway	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	IBA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	ISS	Interproscan
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IBA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043473	pigmentation	None	Extended
BP	GO:0043476	pigment accumulation	None	Extended
BP	GO:0043478	pigment accumulation in response to UV light	None	Extended
BP	GO:0043479	pigment accumulation in tissues in response to UV light	None	Extended
BP	GO:0043480	pigment accumulation in tissues	None	Extended
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	RCA	Interproscan
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048440	carpel development	RCA	Interproscan
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IBA	Interproscan
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0099402	plant organ development	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0019439	aromatic compound catabolic process	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Neighborhood
BP	GO:0046700	heterocycle catabolic process	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	435	579
IPR003439	ABC_transporter-like	1177	1325
IPR011527	ABC1_TM_dom	843	1107
IPR011527	ABC1_TM_dom	88	364

External Links

No external refs found!

AT3G55320 (PGP20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation