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  5. Zm00001e040778_P001

Zm00001e040778_P001


Description : chaperone component ClpC of chloroplast Clp-type protease complex


Gene families : OG0000276 (Archaeplastida) Phylogenetic Tree(s): OG0000276_tree ,
OG_05_0002249 (LandPlants) Phylogenetic Tree(s): OG_05_0002249_tree ,
OG_06_0002384 (SeedPlants) Phylogenetic Tree(s): OG_06_0002384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040778_P001
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00164160 evm_27.TU.AmTr_v1... External stimuli response.temperature.Hsp... 0.09 Archaeplastida
AMTR_s00065p00179810 evm_27.TU.AmTr_v1... External stimuli response.temperature.Hsp... 0.02 Archaeplastida
AMTR_s00110p00042430 evm_27.TU.AmTr_v1... External stimuli response.temperature.Hsp... 0.03 Archaeplastida
AT5G50920 HSP93-V, DCA1,... CLPC homologue 1 0.05 Archaeplastida
Cpa|evm.model.tig00000655.28 No alias External stimuli response.temperature.Hsp... 0.01 Archaeplastida
Cpa|evm.model.tig00021365.4 No alias Chaperone protein ClpB1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre11.g467575 No alias External stimuli response.temperature.Hsp... 0.01 Archaeplastida
Cre12.g533351 No alias Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01007880001 No alias External stimuli response.temperature.Hsp... 0.03 Archaeplastida
GSVIVT01011496001 No alias External stimuli response.temperature.Hsp... 0.03 Archaeplastida
GSVIVT01035900001 No alias External stimuli response.temperature.Hsp... 0.02 Archaeplastida
Gb_20703 No alias chaperone component ClpC of chloroplast Clp-type protease complex 0.05 Archaeplastida
Gb_21720 No alias organellar chaperone (Clp-p|Clp-m) 0.02 Archaeplastida
LOC_Os02g08490.1 No alias organellar chaperone (Clp-p|Clp-m) 0.03 Archaeplastida
LOC_Os03g31300.1 No alias organellar chaperone (Clp-p|Clp-m) 0.05 Archaeplastida
LOC_Os04g32560.1 No alias chaperone component ClpC of chloroplast Clp-type protease complex 0.05 Archaeplastida
LOC_Os05g44340.1 No alias cytosolic chaperone (Hsp101) 0.03 Archaeplastida
LOC_Os12g12850.1 No alias chaperone component ClpC of chloroplast Clp-type protease complex 0.02 Archaeplastida
MA_229920g0010 No alias Chaperone protein ClpB2, chloroplastic OS=Oryza sativa... 0.08 Archaeplastida
MA_8117g0010 No alias ATP-dependent Clp protease ATP-binding subunit ClpA... 0.04 Archaeplastida
Mp1g02560.1 No alias chaperone component ClpC of chloroplast Clp-type protease complex 0.07 Archaeplastida
Pp3c16_17640V3.1 No alias CLPC homologue 1 0.03 Archaeplastida
Pp3c19_4790V3.1 No alias heat shock protein 101 0.02 Archaeplastida
Pp3c24_9060V3.1 No alias casein lytic proteinase B3 0.02 Archaeplastida
Pp3c25_7180V3.1 No alias CLPC homologue 1 0.08 Archaeplastida
Pp3c5_23010V3.1 No alias CLPC homologue 1 0.05 Archaeplastida
Pp3c6_7360V3.1 No alias CLPC homologue 1 0.03 Archaeplastida
Pp3c8_12320V3.1 No alias casein lytic proteinase B3 0.02 Archaeplastida
Smo170696 No alias External stimuli response.temperature.Hsp... 0.02 Archaeplastida
Smo174539 No alias External stimuli response.temperature.Hsp... 0.03 Archaeplastida
Smo411118 No alias External stimuli response.temperature.Hsp... 0.04 Archaeplastida
Smo418380 No alias External stimuli response.temperature.Hsp... 0.03 Archaeplastida
Smo439163 No alias External stimuli response.temperature.Hsp... 0.05 Archaeplastida
Solyc03g115230.3.1 No alias cytosolic chaperone (Hsp101) 0.02 Archaeplastida
Solyc12g042060.3.1 No alias chaperone component ClpC of chloroplast Clp-type protease complex 0.09 Archaeplastida
Zm00001e002026_P002 No alias organellar chaperone (Clp-p|Clp-m) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004832 valine-tRNA ligase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006438 valyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 296 412
IPR019489 Clp_ATPase_C 814 893
IPR004176 Clp_N 181 232
IPR004176 Clp_N 105 157
IPR003959 ATPase_AAA_core 633 807
No external refs found!