Description : CFM2-type plastidial RNA splicing factor
Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree ,
OG_06_0009974 (SeedPlants) Phylogenetic Tree(s): OG_06_0009974_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e041034_P001 | |
Cluster | HCCA: Cluster_70 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00028p00245370 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
AMTR_s00079p00107040 | evm_27.TU.AmTr_v1... | CRM-domain containing factor CFM3,... | 0.03 | Archaeplastida | |
AT3G01370 | ATCFM2, CFM2 | CRM family member 2 | 0.03 | Archaeplastida | |
AT3G18390 | EMB1865 | CRS1 / YhbY (CRM) domain-containing protein | 0.02 | Archaeplastida | |
AT4G29750 | No alias | CRS1 / YhbY (CRM) domain-containing protein | 0.05 | Archaeplastida | |
GSVIVT01008296001 | No alias | CRM-domain containing factor CFM3,... | 0.02 | Archaeplastida | |
GSVIVT01031001001 | No alias | RNA processing.organelle machineries.RNA... | 0.04 | Archaeplastida | |
Gb_18303 | No alias | CRM-domain containing factor CFM2, chloroplastic... | 0.03 | Archaeplastida | |
Gb_37638 | No alias | CFM2-type plastidial RNA splicing factor. CFM3-type... | 0.09 | Archaeplastida | |
Gb_39217 | No alias | CFM2-type plastidial RNA splicing factor | 0.05 | Archaeplastida | |
LOC_Os04g39060.2 | No alias | CRM-domain containing factor CFM2, chloroplastic... | 0.03 | Archaeplastida | |
LOC_Os05g47850.1 | No alias | CRM-domain containing factor CFM3,... | 0.03 | Archaeplastida | |
LOC_Os08g27150.1 | No alias | CRS1 plastidial RNA splicing factor | 0.02 | Archaeplastida | |
LOC_Os09g19850.1 | No alias | CRM-domain containing factor CFM3,... | 0.06 | Archaeplastida | |
LOC_Os11g37990.1 | No alias | CFM3-type plastidial RNA splicing factor | 0.03 | Archaeplastida | |
MA_130902g0010 | No alias | CRM-domain containing factor CFM2, chloroplastic... | 0.03 | Archaeplastida | |
Mp3g06280.1 | No alias | CRM-domain containing factor CFM3,... | 0.05 | Archaeplastida | |
Pp3c13_17270V3.1 | No alias | CRM family member 2 | 0.06 | Archaeplastida | |
Smo120007 | No alias | CRM-domain containing factor CFM3,... | 0.04 | Archaeplastida | |
Smo20706 | No alias | CRM-domain containing factor CFM3,... | 0.03 | Archaeplastida | |
Solyc03g119450.3.1 | No alias | CRM-domain containing factor CFM3,... | 0.05 | Archaeplastida | |
Solyc07g039500.4.1 | No alias | CRM-domain containing factor CFM3,... | 0.02 | Archaeplastida | |
Solyc09g083350.3.1 | No alias | CFM3-type plastidial RNA splicing factor | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004540 | ribonuclease activity | IEP | Neighborhood |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
MF | GO:0004832 | valine-tRNA ligase activity | IEP | Neighborhood |
CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Neighborhood |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
MF | GO:0016874 | ligase activity | IEP | Neighborhood |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
BP | GO:0032259 | methylation | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
No external refs found! |