Zm00001e041034_P001


Description : CFM2-type plastidial RNA splicing factor


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree ,
OG_06_0009974 (SeedPlants) Phylogenetic Tree(s): OG_06_0009974_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041034_P001
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00079p00107040 evm_27.TU.AmTr_v1... CRM-domain containing factor CFM3,... 0.03 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.03 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.02 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.05 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
GSVIVT01031001001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_18303 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
Gb_37638 No alias CFM2-type plastidial RNA splicing factor. CFM3-type... 0.09 Archaeplastida
Gb_39217 No alias CFM2-type plastidial RNA splicing factor 0.05 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
LOC_Os08g27150.1 No alias CRS1 plastidial RNA splicing factor 0.02 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida
LOC_Os11g37990.1 No alias CFM3-type plastidial RNA splicing factor 0.03 Archaeplastida
MA_130902g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.06 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Smo20706 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004832 valine-tRNA ligase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006438 valyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 433 517
IPR001890 RNA-binding_CRM 143 226
IPR001890 RNA-binding_CRM 909 995
IPR001890 RNA-binding_CRM 629 715
No external refs found!