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  5. Zm00001e041082_P001

Zm00001e041082_P001


Description : no hits & (original description: none)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041082_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00182540 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 Archaeplastida
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.1 Archaeplastida
AMTR_s00081p00056740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.04 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G02750 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT2G22410 SLO1 SLOW GROWTH 1 0.02 Archaeplastida
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT2G33760 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.14 Archaeplastida
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G05240 MEF19 mitochondrial editing factor 19 0.06 Archaeplastida
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Archaeplastida
AT5G06540 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G40410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Archaeplastida
AT5G47460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
Gb_00195 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
Gb_05554 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_09407 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Gb_11220 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.02 Archaeplastida
Gb_11926 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_12556 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
Gb_13222 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_14172 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_14324 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_14966 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Gb_16448 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_17076 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_18745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_23678 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_25130 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
Gb_26571 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_27322 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Gb_27381 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_28390 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_28393 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_28902 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Gb_30523 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_31374 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_33210 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_35190 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_37517 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_37572 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_38679 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_38680 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_39402 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os01g60430.1 No alias RNA editing factor (MEF10) 0.06 Archaeplastida
LOC_Os01g62910.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.06 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
LOC_Os03g63260.3 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.02 Archaeplastida
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Pp3c3_24770V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Pp3c4_16600V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Smo120613 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.05 Archaeplastida
Smo134463 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.08 Archaeplastida
Smo52548 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Solyc04g005460.1.1 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.09 Archaeplastida
Zm00001e003284_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.06 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e023333_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e030831_P001 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.04 Archaeplastida
Zm00001e030887_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Zm00001e031396_P001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.06 Archaeplastida
Zm00001e036302_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!