Zm00001e041209_P001

Description : endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1 siRNA biogenesis regulator complex

Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0000940 (LandPlants) Phylogenetic Tree(s): OG_05_0000940_tree ,
OG_06_0002089 (SeedPlants) Phylogenetic Tree(s): OG_06_0002089_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e041209_P001
Cluster	HCCA: Cluster_267

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00127000	evm_27.TU.AmTr_v1...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	Archaeplastida
AT3G03300	ATDCL2, DCL2	dicer-like 2	0.04	Archaeplastida
Cre07.g345900	No alias	No description available	0.03	Archaeplastida
GSVIVT01001045001	No alias	RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator...	0.05	Archaeplastida
GSVIVT01035494001	No alias	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.04	Archaeplastida
Gb_34257	No alias	Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os04g43050.1	No alias	endoribonuclease (DCL4)	0.04	Archaeplastida
MA_10437243g0020	No alias	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Smo444049	No alias	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEA	Interproscan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0005096	GTPase activator activity	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
MF	GO:0008047	enzyme activator activity	IEP	Neighborhood
MF	GO:0016409	palmitoyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
MF	GO:0030695	GTPase regulator activity	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003100	PAZ_dom	835	958
IPR000999	RNase_III_dom	1001	1131
IPR000999	RNase_III_dom	1207	1316
IPR005034	Dicer_dimerisation_dom	544	627
IPR001650	Helicase_C	360	478
IPR006935	Helicase/UvrB_N	36	190

External Links

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Zm00001e041209_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation