Zm00001e041635_P001

Description : component RPS11 of SSU proteome

Gene families : OG0002226 (Archaeplastida) Phylogenetic Tree(s): OG0002226_tree ,
OG_05_0002056 (LandPlants) Phylogenetic Tree(s): OG_05_0002056_tree ,
OG_06_0002184 (SeedPlants) Phylogenetic Tree(s): OG_06_0002184_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e041635_P001
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00158320	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
AMTR_s00046p00028310	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
AT3G48930	EMB1080	Nucleic acid-binding, OB-fold-like protein	0.11	Archaeplastida
AT4G30800	No alias	Nucleic acid-binding, OB-fold-like protein	0.07	Archaeplastida
AT5G23740	RPS11-BETA	ribosomal protein S11-beta	0.12	Archaeplastida
Cpa\|evm.model.tig00000551.22	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
Cre12.g514500	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
GSVIVT01012877001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	Archaeplastida
GSVIVT01035927001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
Gb_14912	No alias	component RPS11 of SSU proteome	0.05	Archaeplastida
Gb_27579	No alias	component RPS11 of SSU proteome	0.04	Archaeplastida
LOC_Os04g42380.1	No alias	component RPS11 of SSU proteome	0.08	Archaeplastida
LOC_Os04g52361.1	No alias	component RPS11 of SSU proteome	0.14	Archaeplastida
LOC_Os08g10608.1	No alias	component RPS11 of SSU proteome	0.15	Archaeplastida
MA_19350g0010	No alias	component RPS11 of SSU proteome	0.07	Archaeplastida
Mp4g23360.1	No alias	component RPS11 of SSU proteome	0.1	Archaeplastida
Mp6g10500.1	No alias	component RPS11 of SSU proteome	0.12	Archaeplastida
Pp3c14_9600V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.08	Archaeplastida
Pp3c1_27980V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.12	Archaeplastida
Pp3c2_13690V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.09	Archaeplastida
Pp3s116_30V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.1	Archaeplastida
Smo268639	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
Solyc06g073790.3.1	No alias	component RPS11 of SSU proteome	0.1	Archaeplastida
Solyc06g073800.3.1	No alias	component RPS11 of SSU proteome	0.03	Archaeplastida
Solyc12g042080.2.1	No alias	component RPS11 of SSU proteome	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006333	chromatin assembly or disassembly	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006553	lysine metabolic process	IEP	Neighborhood
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009085	lysine biosynthetic process	IEP	Neighborhood
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Neighborhood
MF	GO:0009982	pseudouridine synthase activity	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0046451	diaminopimelate metabolic process	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032440	Ribosomal_S11_N	4	72
IPR000266	Ribosomal_S17/S11	74	142

External Links

No external refs found!

Zm00001e041635_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation