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  5. Zm00001e041725_P001

Zm00001e041725_P001


Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001543 (Archaeplastida) Phylogenetic Tree(s): OG0001543_tree ,
OG_05_0001927 (LandPlants) Phylogenetic Tree(s): OG_05_0001927_tree ,
OG_06_0002403 (SeedPlants) Phylogenetic Tree(s): OG_06_0002403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041725_P001
Cluster HCCA: Cluster_364

Target Alias Description ECC score Gene Family Method Actions
Solyc01g111300.4.1 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.05 Archaeplastida
Solyc10g055250.1.1 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 157 174
IPR001878 Znf_CCHC 189 205
IPR002059 CSP_DNA-bd 7 71
No external refs found!