AT3G56340


Description : Ribosomal protein S26e family protein


Gene families : OG0002687 (Archaeplastida) Phylogenetic Tree(s): OG0002687_tree ,
OG_05_0002903 (LandPlants) Phylogenetic Tree(s): OG_05_0002903_tree ,
OG_06_0002971 (SeedPlants) Phylogenetic Tree(s): OG_06_0002971_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G56340
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00042770 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
Cpa|evm.model.tig00001486.9 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 Archaeplastida
Cre16.g682300 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
GSVIVT01024576001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
GSVIVT01032696001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
Gb_00995 No alias component RPS26 of SSU proteome 0.08 Archaeplastida
Gb_00996 No alias component RPS26 of SSU proteome 0.08 Archaeplastida
LOC_Os01g60790.1 No alias component RPS26 of SSU proteome 0.14 Archaeplastida
LOC_Os05g39960.1 No alias component RPS26 of SSU proteome 0.26 Archaeplastida
MA_114136g0010 No alias component RPS26 of SSU proteome 0.05 Archaeplastida
Mp2g06210.1 No alias component RPS26 of SSU proteome 0.06 Archaeplastida
Pp3c16_9210V3.1 No alias Ribosomal protein S26e family protein 0.22 Archaeplastida
Pp3c5_16070V3.1 No alias Ribosomal protein S26e family protein 0.11 Archaeplastida
Pp3c6_8910V3.1 No alias Ribosomal protein S26e family protein 0.2 Archaeplastida
Smo77589 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Solyc04g008810.3.1 No alias component RPS26 of SSU proteome 0.2 Archaeplastida
Solyc06g007470.3.1 No alias component RPS26 of SSU proteome 0.05 Archaeplastida
Zm00001e011780_P001 No alias component RPS26 of SSU proteome 0.24 Archaeplastida
Zm00001e027298_P001 No alias component RPS26 of SSU proteome 0.19 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0009165 nucleotide biosynthetic process RCA Interproscan
BP GO:0009664 plant-type cell wall organization RCA Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
BP GO:0042545 cell wall modification RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006096 glycolytic process IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006164 purine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006754 ATP biosynthetic process IEP Neighborhood
BP GO:0006757 ATP generation from ADP IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
MF GO:0008143 poly(A) binding IEP Neighborhood
BP GO:0009123 nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009132 nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009166 nucleotide catabolic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0009260 ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0009955 adaxial/abaxial pattern specification IEP Neighborhood
BP GO:0010038 response to metal ion IEP Neighborhood
BP GO:0010252 auxin homeostasis IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Neighborhood
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Neighborhood
BP GO:0042866 pyruvate biosynthetic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
BP GO:0046031 ADP metabolic process IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
BP GO:0046390 ribose phosphate biosynthetic process IEP Neighborhood
BP GO:0046434 organophosphate catabolic process IEP Neighborhood
BP GO:0046686 response to cadmium ion IEP Neighborhood
BP GO:0046939 nucleotide phosphorylation IEP Neighborhood
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
BP GO:0071215 cellular response to abscisic acid stimulus IEP Neighborhood
BP GO:0071396 cellular response to lipid IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0072522 purine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090506 axillary shoot meristem initiation IEP Neighborhood
BP GO:0097306 cellular response to alcohol IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Neighborhood
BP GO:1901292 nucleoside phosphate catabolic process IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000032 regulation of secondary shoot formation IEP Neighborhood
InterPro domains Description Start Stop
IPR000892 Ribosomal_S26e 1 106
No external refs found!