AT3G56350

Description : Iron/manganese superoxide dismutase family protein

Gene families : OG0003026 (Archaeplastida) Phylogenetic Tree(s): OG0003026_tree ,
OG_05_0005815 (LandPlants) Phylogenetic Tree(s): OG_05_0005815_tree ,
OG_06_0006556 (SeedPlants) Phylogenetic Tree(s): OG_06_0006556_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G56350
Cluster	HCCA: Cluster_182

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cpa\|evm.model.tig00000970.32	No alias	Redox homeostasis.enzymatic reactive oxygen species...	0.01	Archaeplastida
GSVIVT01024575001	No alias	Redox homeostasis.enzymatic reactive oxygen species...	0.17	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004784	superoxide dismutase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISS	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006801	superoxide metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009685	gibberellin metabolic process	None	Extended
BP	GO:0009686	gibberellin biosynthetic process	RCA	Interproscan
BP	GO:0009740	gibberellic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009838	abscission	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010227	floral organ abscission	IEP	Interproscan
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016101	diterpenoid metabolic process	None	Extended
BP	GO:0016102	diterpenoid biosynthetic process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
MF	GO:0016209	antioxidant activity	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	None	Extended
BP	GO:0019430	removal of superoxide radicals	ISS	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0098754	detoxification	None	Extended
BP	GO:0098869	cellular oxidant detoxification	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1990748	cellular detoxification	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000322	storage vacuole	IEP	Neighborhood
CC	GO:0000326	protein storage vacuole	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Neighborhood
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEP	Neighborhood
MF	GO:0004462	lactoylglutathione lyase activity	IEP	Neighborhood
MF	GO:0004470	malic enzyme activity	IEP	Neighborhood
MF	GO:0004473	malate dehydrogenase (decarboxylating) (NADP+) activity	IEP	Neighborhood
MF	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	IEP	Neighborhood
MF	GO:0005372	water transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
BP	GO:0006108	malate metabolic process	IEP	Neighborhood
BP	GO:0006829	zinc ion transport	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
MF	GO:0008106	alcohol dehydrogenase (NADP+) activity	IEP	Neighborhood
MF	GO:0008379	thioredoxin peroxidase activity	IEP	Neighborhood
MF	GO:0008429	phosphatidylethanolamine binding	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0009266	response to temperature stimulus	IEP	Neighborhood
BP	GO:0009409	response to cold	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009790	embryo development	IEP	Neighborhood
BP	GO:0009793	embryo development ending in seed dormancy	IEP	Neighborhood
BP	GO:0009845	seed germination	IEP	Neighborhood
BP	GO:0009933	meristem structural organization	IEP	Neighborhood
BP	GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	IEP	Neighborhood
BP	GO:0010162	seed dormancy process	IEP	Neighborhood
BP	GO:0010231	maintenance of seed dormancy	IEP	Neighborhood
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	Neighborhood
MF	GO:0010340	carboxyl-O-methyltransferase activity	IEP	Neighborhood
BP	GO:0010344	seed oilbody biogenesis	IEP	Neighborhood
MF	GO:0015002	heme-copper terminal oxidase activity	IEP	Neighborhood
MF	GO:0015250	water channel activity	IEP	Neighborhood
BP	GO:0016145	S-glycoside catabolic process	IEP	Neighborhood
MF	GO:0016229	steroid dehydrogenase activity	IEP	Neighborhood
MF	GO:0016595	glutamate binding	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016652	oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	IEP	Neighborhood
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Neighborhood
MF	GO:0016676	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
BP	GO:0019759	glycosinolate catabolic process	IEP	Neighborhood
BP	GO:0019762	glucosinolate catabolic process	IEP	Neighborhood
BP	GO:0019915	lipid storage	IEP	Neighborhood
BP	GO:0022611	dormancy process	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Neighborhood
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	Neighborhood
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
CC	GO:0042807	central vacuole	IEP	Neighborhood
BP	GO:0043200	response to amino acid	IEP	Neighborhood
BP	GO:0043647	inositol phosphate metabolic process	IEP	Neighborhood
MF	GO:0045735	nutrient reservoir activity	IEP	Neighborhood
BP	GO:0046173	polyol biosynthetic process	IEP	Neighborhood
BP	GO:0048316	seed development	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0048700	acquisition of desiccation tolerance in seed	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0050826	response to freezing	IEP	Neighborhood
BP	GO:0050898	nitrile metabolic process	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051260	protein homooligomerization	IEP	Neighborhood
MF	GO:0051920	peroxiredoxin activity	IEP	Neighborhood
MF	GO:0051998	protein carboxyl O-methyltransferase activity	IEP	Neighborhood
MF	GO:0070524	11-beta-hydroxysteroid dehydrogenase (NADP+) activity	IEP	Neighborhood
MF	GO:0071614	linoleic acid epoxygenase activity	IEP	Neighborhood
MF	GO:0072555	17-beta-ketosteroid reductase activity	IEP	Neighborhood
MF	GO:0072582	17-beta-hydroxysteroid dehydrogenase (NADP+) activity	IEP	Neighborhood
BP	GO:0080028	nitrile biosynthetic process	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
BP	GO:0097437	maintenance of dormancy	IEP	Neighborhood
BP	GO:0097439	acquisition of desiccation tolerance	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR019831	Mn/Fe_SOD_N	37	116
IPR019832	Mn/Fe_SOD_C	126	228

External Links

No external refs found!

AT3G56350

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation